Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021976
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 155 3e-38
02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182... 47 1e-05
03_03_0161 - 14960208-14960406,14960503-14960903 29 3.7
12_01_0967 + 9739784-9739925,9740096-9740223 28 5.0
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052 28 5.0
12_01_0647 - 5485100-5487028 28 6.5
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 28 6.5
03_02_0720 + 10662494-10663564 28 6.5
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 28 6.5
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 8.7
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 27 8.7
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 27 8.7
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 155 bits (375), Expect = 3e-38
Identities = 67/86 (77%), Positives = 75/86 (87%)
Frame = +1
Query: 250 SSFGLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGD 429
++ GL + GF TA +TKLFPTRSHTVAAQGGINAALGNM ED W WHMYDTVKGSDWLGD
Sbjct: 74 AAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGD 133
Query: 430 QDAIHYMTKEAPHAVIELDNYGMPFS 507
QD+I YM +EAP AVIEL+NYG+PFS
Sbjct: 134 QDSIQYMCREAPKAVIELENYGLPFS 159
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +2
Query: 518 GKIYQRAFGGQSLKFGKGGQAHRCCAVA 601
GKIYQRAFGGQSL FGKGGQA+RC A
Sbjct: 164 GKIYQRAFGGQSLDFGKGGQAYRCACAA 191
>02_01_0273 +
1822370-1822503,1822913-1823258,1823393-1823635,
1824212-1824268,1824407-1824487,1824725-1824786,
1824990-1826004
Length = 645
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/73 (36%), Positives = 38/73 (52%)
Frame = +1
Query: 286 AVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAP 465
A++TK P S+T AQGG++A L DS HM DT+ +L D++ + + E P
Sbjct: 110 AIITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDEETVRVVCTEGP 167
Query: 466 HAVIELDNYGMPF 504
V EL G F
Sbjct: 168 ERVKELIAMGASF 180
>03_03_0161 - 14960208-14960406,14960503-14960903
Length = 199
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 255 AARSPAPPAPITNASCLWSITVYALVIFVVTEASLEXAPE 136
AA S APP S S+TV LV+ V + A+ +P+
Sbjct: 18 AAASAAPPEAAGKGSATISVTVVLLVLLVASVAAFLMSPQ 57
>12_01_0967 + 9739784-9739925,9740096-9740223
Length = 89
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -2
Query: 386 QSQLSSSMFPKAALIPPCAATVCDLVGNNLVTTAVLNPSWTRPKLLEVLLHQPQ*LMH 213
Q QL + + ++ PCAAT + L + + +PS+ PK+ + + P+ L H
Sbjct: 30 QYQLQPHLMVQQQMLSPCAATATTVCWRLLRSDSSSSPSYVGPKVAVNMRYLPK-LQH 86
>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
Length = 495
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +2
Query: 320 ILLLHRVELMLLWETWRKTVGSGICMTQLKVPIGLEIRM 436
+++ R++ ++LW+T+ G C T++K+ E+R+
Sbjct: 268 LVVAPRLDRLILWKTFMGFPGEIFCRTRVKIGYATELRV 306
>12_01_0647 - 5485100-5487028
Length = 642
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 328 AAQGGINAALGNMEEDSWLWHMYDTVKG-SDWLGDQDAIHYMTKEAPHAVIELDNY 492
A Q G +LG++ D WLW++ D ++ D + + + K V EL +Y
Sbjct: 60 ANQSGETRSLGDL--DVWLWNLRDAIEELEDAIDEHEYYKLREKAKEQEVCELGSY 113
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 373 DSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 486
D WLW D V+G++ + D+ + + +EA +EL+
Sbjct: 369 DKWLWQFRDAVEGAEDVLDEIDYYKLEEEAGVHNLELE 406
>03_02_0720 + 10662494-10663564
Length = 356
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 297 SYDSSFKSFLDKTKAARSPAPPAPITNAS 211
S+ SS K +AARSP PP P + AS
Sbjct: 242 SWASSRDRIAAKLRAARSPLPPQPQSEAS 270
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +1
Query: 310 TRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 486
T +H V G NA + LW ++G WL D+ + + P+ V+ D
Sbjct: 74 TLAHIVFVIGASNATWAKRRVYTGLWWRPGAMRGHVWLDDEPSGQWRPSWPPYRVLRPD 132
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 421 LGDQDAIHYMTKEAPHAVIELDNYGMPFSPPRRKDLPE 534
LG+ ++ + +EAP LD P PP D+PE
Sbjct: 89 LGEPPSLPELLEEAPSQAETLDTPPSPPPPPLEDDIPE 126
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +1
Query: 235 WSRTSSSF----GLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLW 387
WS +SSS G + +TA K R AA+G +NA ++ W W
Sbjct: 31 WSSSSSSGTSGRGQLASASRTATAKKSGRARGKKPAAEGYLNATYADIPAPRWDW 85
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -2
Query: 407 LTVSYICQSQLSSSMFPKAALIPPCAATVCDLVGNNLVTTAVLNPSWTRPKLLEVLLHQP 228
+ V Y+ ++ L++ P A +P C VC ++ A+++PS + +L L+H
Sbjct: 325 MVVPYLVRAVLAT---PLRAFVPSCPR-VCSSASSSSTIAAIVSPSSSLARLRAPLVHDA 380
Query: 227 Q*LMHH 210
+H+
Sbjct: 381 LLCVHN 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,150
Number of Sequences: 37544
Number of extensions: 372695
Number of successful extensions: 1104
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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