Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021976
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.19 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.57 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.76 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.76 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 388 HMYDTVKGSDWLGD-QDAIHYMTKEAPHAVIELDNYGMPFSP 510
           H YD +  + W+   + AI   T   P  +IEL  + MP  P
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWTCRQPEPLIELIEHWMPLLP 507


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 246 SPAPPAPITNASCLWSITVY 187
           +P  P P + + C W+IT Y
Sbjct: 58  NPRYPLPYSGSKCTWTITSY 77


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 223 YWGWWSRTSSSFGLVQEGFKTAVVTKLFPTR 315
           YW  ++   S+   + +GF+T   +K+F +R
Sbjct: 267 YWRIYNAAVSTTKAINQGFRTTKSSKMFGSR 297


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 280 KTAVVTKLFPTRSHTVAAQGG 342
           + A  TKL P R HTV  +GG
Sbjct: 31  RPAANTKLGPQRIHTVRTRGG 51


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 478 ELDNYGMPFSPPRRK 522
           +LDN  MP + PRRK
Sbjct: 16  DLDNVTMPETTPRRK 30


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 347 LIPPCAATVCDLVGNNLVTTAVL 279
           L+PP     CD+ G  L T   L
Sbjct: 365 LLPPGVCYTCDVCGKTLSTKLTL 387


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +1

Query: 439 IHYMTKEAPHAVIELDNYG 495
           +HY   ++ +  +E+++YG
Sbjct: 165 LHYYPLDSQNCTVEIESYG 183


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 469 HEALL*SCSEWHPDLQANRNL*LCHTYARANCLPPC 362
           +EA    C E +PD+  N  L     +   N + PC
Sbjct: 212 NEAFYICCEEPYPDIVFNITLRRKTLFYTVNLIIPC 247


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 360 SQSSINSTLCSNSM*SCREQL 298
           S SS N TLC     +CR  L
Sbjct: 662 SYSSNNKTLCKCDAQNCRRYL 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,011
Number of Sequences: 438
Number of extensions: 3516
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)