Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021975
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   2.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.5  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +3

Query: 75  SRRRIKYVRSKWRVHEFEIWSTXMICRVVTLRMKDSVLVWLGSKVEPALGELALGVPAPG 254
           S R    +R +  +HEF+ W      +++  +   + L W   +    LG +A G   PG
Sbjct: 38  SSRLFSVIRYESIIHEFDPWFNFRASKILVEQGFYNFLNWFDERSWYPLGRVAGGTLYPG 97


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -1

Query: 529 IHESEVHHTNQ*SRRRPQLQCVLCGQVSETFRATFNFCNKCSFNKRQSEPIEHTAA 362
           I    V  T + ++RR +  C+ C +       T  FC  C+   R+ E   ++AA
Sbjct: 16  IPNPNVEPTPKPTKRRTKTGCLTCRRRRIKCDETKPFCLNCTKTNRECEGYPNSAA 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,914
Number of Sequences: 5004
Number of extensions: 38536
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)