Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021975
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0445 + 17989438-17990895                                         28   5.0  
05_03_0088 - 8308587-8308649,8308682-8308738,8310403-8310501,831...    28   5.0  
12_01_0426 - 3356350-3356745,3357604-3357921                           27   8.8  
08_02_0436 + 17156894-17156968,17157366-17157390,17158126-171582...    27   8.8  

>10_08_0445 + 17989438-17990895
          Length = 485

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 439 MFLRPDHRGHTAAADGDG 492
           ++L   +RGHTAA DGDG
Sbjct: 51  VWLVSSYRGHTAAGDGDG 68


>05_03_0088 -
           8308587-8308649,8308682-8308738,8310403-8310501,
           8311501-8311620,8311715-8311837,8312416-8312471,
           8315404-8315451,8315555-8315615
          Length = 208

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 283 QRRGQSRSWRPGAGTPSASSPNAGSTLLPSHTKTESFIRS 164
           +RR  +  +  GA TP   S    +  LP H +   FI+S
Sbjct: 12  ERRPPNHIYAAGAPTPELVSGGVRAVFLPQHVQVNHFIQS 51


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 487 DGFIDLYDGPLIHESSSLRRWF 552
           DG +  YDGP I ES+   RWF
Sbjct: 153 DGVLRFYDGPAI-ESNIYNRWF 173


>08_02_0436 +
           17156894-17156968,17157366-17157390,17158126-17158202,
           17158685-17158828,17159427-17159596,17160246-17160360
          Length = 201

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 205 LLPSHTKTESFIRSVTTRHIXSVLHISNSWTRHLLLTYLMRRL 77
           LLP   + E+ IR     H+  VLH         +LT L RRL
Sbjct: 100 LLPGPRQEENSIRHYRRHHVSMVLHQDRLRQVRQMLTRLRRRL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,354
Number of Sequences: 37544
Number of extensions: 280489
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)