Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021975
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.4  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 277 RGQSRSWRPGAGTPSASSP 221
           +G++++W   AGTP   SP
Sbjct: 63  QGEAQAWFGFAGTPGYLSP 81


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 97  TYLMRRLDVTILGDVPSIMFPGVLL 23
           TYL+R   +T LGD+ S +  G+L+
Sbjct: 29  TYLVRSRTLTSLGDL-SDVHTGILI 52


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 153 RVVTLRMKDSVLVWLGSKVEP 215
           R+ T  MK+++  W G+ + P
Sbjct: 409 RMSTGEMKEAITQWQGNPISP 429


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 277 RGQSRSWRPGAGTPSASSPNAGSTLLPSHTKT 182
           R +S++    A TP+  +    +T LP+ + T
Sbjct: 203 RDESKAGSTDASTPATVTTTGATTTLPAASAT 234


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 512 PSYKSIKPSPSAAAVCPLWSG 450
           PS+    P P      PLW+G
Sbjct: 29  PSWDGKMPQPCILKPKPLWTG 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,302
Number of Sequences: 438
Number of extensions: 2729
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)