Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021972
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   1.3  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    28   1.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.3  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   7.0  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   9.3  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   9.3  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 511 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 657
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -2

Query: 314 DKTIVDAKSK--LMDVNFNSVVILDKNNLQYAKLIYNINDFLK 192
           +K   DA S+  L+DV  +++ I DK N Q+ KLI++   F+K
Sbjct: 239 EKGFSDASSRRFLLDVRVDNLHI-DKLNRQWVKLIFHGQSFMK 280


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 506 SVNGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYS 685
           + + S     +   S+  T SAT      S   A ++  +S+      NSTT A A S S
Sbjct: 185 AASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSS 244

Query: 686 MYS 694
           + S
Sbjct: 245 ISS 247


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 732 RHRTARQQQAASNEYIEYDFA 670
           R RT  +Q   + +YIEYDF+
Sbjct: 43  RKRTFDEQSEITKDYIEYDFS 63


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 137 HYFAKFCVIFSRRIFYQSPLENHLYYKLILRTVDY 241
           H FA FCV       + +P+ + L Y L+ + +DY
Sbjct: 87  HRFASFCVYMFILGMFVTPIFSFL-YSLLFKNLDY 120


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 773 GEDAVLVLGDSPSIDTEPPGSSRPPAMSTSNMT 675
           G+DAV V G SPS     P S    + ST +++
Sbjct: 511 GDDAVYVSGRSPSFAASRPSSVDFMSQSTDSLS 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,920
Number of Sequences: 5004
Number of extensions: 66630
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)