Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021972
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774...    61   8e-10
03_05_0600 + 26021863-26022469,26022562-26022992                       30   1.8  
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639...    30   2.4  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    29   4.2  
06_01_0707 + 5136210-5136584                                           29   5.5  
09_04_0258 - 16175258-16176069,16176111-16176414                       28   7.3  
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442...    28   9.6  
05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919     28   9.6  

>11_04_0007 -
           12074472-12074538,12074908-12075116,12077202-12077463,
           12077547-12078043,12078651-12078719,12079258-12079363,
           12080272-12080295,12081184-12081242,12081383-12081520
          Length = 476

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 33/76 (43%), Positives = 45/76 (59%)
 Frame = +1

Query: 493 KTSIIGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYG 672
           K ++ GQRIKTRKR+     DP  F DA+VQ      GDL+   K ++S  S L++ RYG
Sbjct: 70  KPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKSIES--SDLNFSRYG 127

Query: 673 EVIFDVLIAGGLLLPG 720
           +  F+V+  GG   PG
Sbjct: 128 DTFFEVVFIGGRTQPG 143


>03_05_0600 + 26021863-26022469,26022562-26022992
          Length = 345

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 740 PSIDTEPPGSSRPPA 696
           PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234


>03_02_0205 +
           6389343-6389609,6390418-6390486,6390662-6390757,
           6391120-6391244,6391331-6391483,6392863-6392992,
           6393122-6393282,6393660-6393702,6393869-6394042,
           6394471-6394525,6394567-6394746,6396234-6396339,
           6396448-6396506,6397419-6397541,6397825-6397919
          Length = 611

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 511 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE 675
           Q +KT  R    KY P+  +D    G E    ++ AAY+ L     +  Y R+GE
Sbjct: 77  QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 538 EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE-VIFD 687
           EK+K DP GF D  V     A G ++    +  S+G   DY  YGE V+FD
Sbjct: 62  EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107


>06_01_0707 + 5136210-5136584
          Length = 124

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 661 GSRVLIRPSLGTCRLRRDRHRPAP 590
           G RVL+ PS GT  LRR   RP P
Sbjct: 70  GGRVLLSPS-GTSSLRRSHRRPPP 92


>09_04_0258 - 16175258-16176069,16176111-16176414
          Length = 371

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 673 RHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 560
           R   G+    +P  G  RLRR RH  A  P  +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173


>07_01_0593 +
           4417753-4417759,4418240-4419698,4419819-4421301,
           4421378-4421419,4421420-4421584,4421669-4421864,
           4421955-4422066,4422154-4422301,4422417-4422614,
           4422710-4422866,4422882-4422988,4423084-4423245,
           4423314-4423562,4423676-4423810
          Length = 1539

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 254 ILDKNNLQYAKLIYNINDFL 195
           IL KN+  Y  + YN+ND+L
Sbjct: 890 ILSKNSFIYRNITYNVNDYL 909


>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
          Length = 130

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 657 LPTLWRSHIRCTHCWRPAAAGRF 725
           LP +    + C +C RP AAGRF
Sbjct: 89  LPAVAADLVDCMNCGRPVAAGRF 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,951,224
Number of Sequences: 37544
Number of extensions: 427868
Number of successful extensions: 1382
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)