Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021972
         (783 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   6.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   8.1  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   8.1  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -3

Query: 655  RVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLF 530
            R  +  +  T   +R R  P P P P   G R+   SL   +
Sbjct: 1107 RTSLYSARNTSEEQRGRRHPTPSPPPRAVGRRAEVRSLGERY 1148


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 538  EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKL 654
            EK K + N  RDA V+ LER   D     K +D    KL
Sbjct: 1283 EKPKQESN--RDADVKDLERTIWDRSKQLKIIDLGALKL 1319


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 722 PPGSSRPPAMS 690
           PPGS RPP +S
Sbjct: 11  PPGSHRPPGLS 21


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,236
Number of Sequences: 2352
Number of extensions: 16349
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)