Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021972
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.79 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   7.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   7.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 408 ACSEKKETL*CSLFPCARDNVCGVAGYP 325
           AC  + E     + P  +++VCGV G P
Sbjct: 521 ACRPRHEIRSTDVIPGTQEHVCGVKGIP 548


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 782 LIGGEDAVLVLGDSPSIDTEPPGSSRPPAMSTSN 681
           L GG        +  S D+    S RPPA ++SN
Sbjct: 247 LTGGNSGNAAGNNEDSSDSGAAASDRPPASASSN 280


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 272 NFNSVVILDKNNLQYAKLIYNIN 204
           N+N+    + N   Y KL YNIN
Sbjct: 100 NYNNYNYNNNNYNNYKKLYYNIN 122


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/34 (17%), Positives = 21/34 (61%)
 Frame = +2

Query: 146 AKFCVIFSRRIFYQSPLENHLYYKLILRTVDYFY 247
           +K+ ++ S    + + +++  +Y++  R +DY++
Sbjct: 397 SKYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYH 430


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/34 (17%), Positives = 21/34 (61%)
 Frame = +2

Query: 146 AKFCVIFSRRIFYQSPLENHLYYKLILRTVDYFY 247
           +K+ ++ S    + + +++  +Y++  R +DY++
Sbjct: 397 SKYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYH 430


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 610 LDAAYKYLDSAGSKLDYRRYGEVIFDVLI 696
           +D  Y  LDS    ++   YG  + DV++
Sbjct: 163 MDLHYYPLDSQNCTVEIESYGYTVLDVVM 191


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 188 SPLENHLYYKLILRTVDYF 244
           SP+ N+LYY  +  T  Y+
Sbjct: 259 SPMTNNLYYSPVASTSLYY 277


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 188 SPLENHLYYKLILRTVDYF 244
           SP+ N+LYY  +  T  Y+
Sbjct: 259 SPMTNNLYYSPVASTSLYY 277


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 142 IVIYLKIILKNNE*ILRGHQKFQKWFYCYY 53
           + +Y  I++KN++      +K+Q+ F  Y+
Sbjct: 98  VAVYAFIVVKNDDNFRNISEKYQEIFNGYF 127


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 188 SPLENHLYYKLILRTVDYF 244
           SP+ N+LYY  +  T  Y+
Sbjct: 259 SPMTNNLYYSPVASTSLYY 277


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 476 MSQKVEKPVLS 508
           M QK+EKPVLS
Sbjct: 314 MLQKLEKPVLS 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,592
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)