Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021969
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.11
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 30 0.44
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 30 0.44
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 29 1.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.8
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.4
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 26 7.2
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 26 7.2
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 9.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.5
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 9.5
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/70 (20%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 86 IEHKIRNLEKRKSKLT-SYRD-LQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVML 259
+ H++ +L+ + L + D ++K E+++ + + K DE+ ++++ +L +++
Sbjct: 110 LSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINS 169
Query: 260 *QSLQSVRQK 289
+S QS+ Q+
Sbjct: 170 LESAQSIEQE 179
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 14 ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 187
A+ +++ ++++DTP+ + + +R N EK+ SKL + R ++ KE+
Sbjct: 72 ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131
Query: 188 AVAKYDEVAQTL 223
VA E A+ L
Sbjct: 132 VVAVNAETAKAL 143
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.9 bits (64), Expect = 0.44
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 753 IYFWFMSTLFMHLFFYWNMTFFYFGDCTIYS 661
+YF + +TL H+FF + F++ C Y+
Sbjct: 67 VYFMYTATLGTHVFFMLALPIFFWSGCIYYT 97
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 762 NWHIYFWFMSTLFMHLFFYWNMTFFYFG 679
NW +YF + S F+ F + +T+ FG
Sbjct: 1379 NWRVYFGWCSIAFIQAFLVFYVTYSLFG 1406
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 527 VKTRLSSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 378
V SSF TS Y+ S+ FK SSV L + + AS+LPI
Sbjct: 434 VSNNTQSSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 2.4
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +2
Query: 11 AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 190
A N+K+ + + SE+ + I ++ ++ + RN R+ KL DL+K+ K+ K+
Sbjct: 533 AINSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLE 586
Query: 191 VAKYDEVAQTLEFARDLSKQ 250
V K +E+A + L+KQ
Sbjct: 587 VEKVEEIANLKKELTHLAKQ 606
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 35 PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 208
P ED P Q I +K+K+ +LQ AGK+L + Q+ A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192
Query: 209 VAQ 217
V Q
Sbjct: 193 VTQ 195
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 107 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQV-ML*QSLQSVR 283
LEK KS L +R+ K+L + V KYD+ ++ + + + + + + L S R
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 284 QKNKLKRKPGFVM 322
K P +V+
Sbjct: 68 FIVKASSGPRYVV 80
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 744 WFMSTLFMHLFFYWNMTFFYFGDCTIYSFI 655
W +++ F L F W TFF+ C I S I
Sbjct: 336 WVLAS-FYSLHFLWLCTFFHALQCAIISSI 364
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 560 VEVFCSSCYLKVKT--RLSSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASA 387
+ SS Y + + ++SSF G TS Y +K SSS LA+ VL+S
Sbjct: 825 ISSIASSSYTSIPSISSIASSFFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSST 884
Query: 386 L 384
+
Sbjct: 885 I 885
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +2
Query: 20 AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 199
A K ASS D+P+R+ +++ + + + +SY N+D+ + +
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426
Query: 200 YDEVAQTLEFARDLSK 247
Y V+++ F D+S+
Sbjct: 427 YSAVSESSNFTHDVSR 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,245
Number of Sequences: 5004
Number of extensions: 53685
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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