Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021967X
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    38   0.001
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   3.3  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   5.8  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    25   7.7  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   7.7  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   7.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.7  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +3

Query: 165 SNFGRAVRKTAGRCHQLQLSLTCGLCTFLCNADSNFVSDVVTKLRYEVFQPGDIIIKEGT 344
           ++F R V + A R   L  SL   +   L + D      +   L+  V+Q G I+I++G 
Sbjct: 252 TSFRRIVFENAYRQRMLYESLLEEV-PILSSLDKYQRQKIADALQTVVYQAGSIVIRQGD 310

Query: 345 IGNKMYVIQEG 377
           IGN+ Y+I++G
Sbjct: 311 IGNQFYLIEDG 321



 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 391 VMANGE-VPTSLSDGSYFGEICLL-RTVR 471
           V+ NG+ V  +L+ G YFGE+ L+  TVR
Sbjct: 325 VVKNGKGVVVTLTKGDYFGELALIHETVR 353



 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 403 GEVPTSLSDGSYFGEICLL 459
           G   T++S G YFGE+ L+
Sbjct: 210 GNYITTISPGEYFGELALM 228


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 68  KSTWRIANYHVKCVNVSPSTSNT 136
           KSTW+IAN  V   N++P+  NT
Sbjct: 353 KSTWKIANKSVYS-NLAPTLKNT 374


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 397 ANGEVPTSLSDGSYFGEICLLRTV 468
           ANG  PT  +D S+FG   +  TV
Sbjct: 288 ANGNSPTLKNDSSFFGSASVRPTV 311


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 276 SDVVTKLRYEVFQPGDIIIKEGTIGNKMYVIQE 374
           S++  KL  ++  PG I+I  GT    +Y+I++
Sbjct: 169 SELPQKLVDQLKSPGKILIPIGTYSQNIYLIEK 201


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 165 FLIEEFPLVSVFEVLGDTL 109
           F+I EFP    FE+L + L
Sbjct: 186 FIINEFPFEQAFEILSNAL 204


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 428 SDRLVGTSPLAM---TMIYDAFLDDIHFIPYCSFLYDNV 321
           SDRLV    L +   T+  +  +DDI   PY S +Y+++
Sbjct: 368 SDRLVDGGRLVLWLPTITEEYGIDDIPSHPYLSLIYNSI 406


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 92  YHVKCVNVSPSTSNTDTKGNSSMRK*FWASCAKNCGKM 205
           Y  KCVN     S+T+    +   K F +S +KN G++
Sbjct: 12  YINKCVNNGTMASSTNVPDRTVGSKSFASSVSKNDGRL 49


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 62  K*KSTWRIANYHVKCVNVSPSTSNT 136
           K ++ W + N HV C+++   ++N+
Sbjct: 33  KVRNAWNVTNGHVYCIHLCSRSANS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,162
Number of Sequences: 5004
Number of extensions: 41273
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)