Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021965
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 181 1e-46
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 103 3e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 8e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 69 7e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 69 9e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 6e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 64 1e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 64 1e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 2e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 4e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 58 9e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 58 2e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 54 2e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 53 5e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 8e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 50 3e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 3e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 3e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 4e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 5e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 3e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.013
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 34 0.018
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.29
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.29
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.88
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.5
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 181 bits (440), Expect = 1e-46
Identities = 88/153 (57%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPI 615
K +G++ PTPIQ Q WP+AMSG+ + TGSGKTL+Y LPAIVHIN QP + GDGPI
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 616 ALVLAPTRELARQIQQVAADFGHTSYVRNTCVF 714
LVLAPTRELA QIQQ FG +S +RNTCV+
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVY 230
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 103 bits (246), Expect = 3e-23
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG 609
+ ++GY++PT IQAQ P SG+ + +TGSGKT+A++LP HI +Q P++ G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 610 PIALVLAPTRELARQIQQVAADFGHTSYVRNTCVF 714
PIA+++ PTRELA QI + F +R C +
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAY 526
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 88.6 bits (210), Expect = 8e-19
Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 520 Y-QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELARQIQ 660
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELA+QIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 68.9 bits (161), Expect = 7e-13
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 502 GKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELARQ 654
G+ + +TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 68.5 bits (160), Expect = 9e-13
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTG 531
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+ +A QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 532 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELARQIQQVAA 672
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 673 DFGHTSYVRNTCVF 714
F + S+VR V+
Sbjct: 277 KFCYRSWVRPCAVY 290
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 65.7 bits (153), Expect = 6e-12
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVH 573
F+ N +++ V G+K+ TP+QA P+ + K + + TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 574 INNQPPIRRGDGPIALVLAPTRELARQIQQVAAD 675
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 64.5 bits (150), Expect = 1e-11
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +1
Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKT 543
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK +A +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 544 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELARQIQQV 666
AY++P + + Q I G AL+L PTRELA+Q+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 64.5 bits (150), Expect = 1e-11
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYQTGSGKTLAYILPAIV 570
F+E D + + + +G+K PTPIQ + P+ ++ + I LA QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA-QTGSGKTAAFALPVIQ 106
Query: 571 HI-NNQPPIRRGDGPIALVLAPTRELARQIQQVAADFGHTSYVRNTCV 711
+ NN P A+VLAPTRELA QI + G + VR+ +
Sbjct: 107 ELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVI 148
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 2e-10
Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 505 KI*L-AYQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELARQIQQVAAD 675
+ L A +TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.7 bits (138), Expect = 4e-10
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVH 573
F+ + + + G+K PTPIQ + P+ + G+ + +TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 574 INNQPPIRRGDGPIALVLAPTRELARQIQQVAADFGHTSYVRNTCV 711
+ + AL+L+P RELA Q +V DF + +R+ +
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAI 173
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 58.4 bits (135), Expect = 9e-10
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVH 573
F+ N + +G+ +G++ PT IQ + P+A+ GK I A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 574 INNQPPIRRGDGPIALVLAPTRELARQIQQVA 669
+ +P ++ L+L PTRELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + G+ G++ P+PIQ + PIA+SG+ LA + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 574 INNQPPIRRGDGPIALVLAPTRELARQIQQVAADFG 681
++ + + L+L PTRELA Q QV G
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG---KI*LAYQTGSGKTLAYIL 558
++ FEE + +G+ +M +++P+ IQ + P+ +S + Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 559 PAIVHINNQPPIRRGDGPIALVLAPTRELARQIQQVAADFGHTSYVR 699
+ ++ P P A+ LAP+RELARQI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 52.8 bits (121), Expect = 5e-08
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G+
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 511 *LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELARQIQQVAADFG-H 684
+A Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 685 TSYVRNTCV 711
+ + C+
Sbjct: 116 MNVQCHACI 124
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.0 bits (119), Expect = 8e-08
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
EE E+ + + +F E + +K + T IQ Q P A+ G+
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 511 *L-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELARQIQQVAADFG 681
L A +TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 50.0 bits (114), Expect = 3e-07
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKI*LAYQTGSGKTLAYILPA 564
I F++ N + +G+ G++ P+ IQ + PI + Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 565 IVHINNQPPIRRGDGPIALVLAPTRELARQIQQVAADFGHTSYVR-NTCV 711
+ I+ +++ AL+LAPTRELA+QIQ+V G V + C+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACI 122
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 50.0 bits (114), Expect = 3e-07
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 468
P P++ ++ +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 469 IQAQGWPIAMSGKI*LAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
IQ P S + LA TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 646 ARQIQQVA 669
QI + A
Sbjct: 128 CEQIYRQA 135
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.0 bits (114), Expect = 3e-07
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LAY---QTGSGKTLAYILPAIVHINNQPP--IRRGDG 609
M PT IQ+ P ++ A+ QTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 610 PIALVLAPTRELARQIQQVA 669
A+++APTREL +QI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.4 bits (105), Expect = 4e-06
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
F + ++ +K + EPT IQ + G+ + +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 574 INNQPPIRRGDGPIALVLAPTRELARQIQQVAADFG 681
+ P G AL+L PTRELA QI + A G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.0 bits (104), Expect = 5e-06
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSG-KI*LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 618
G+ +P PIQ+ P A G I TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 619 LVLAPTRELARQIQQ 663
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.6 bits (98), Expect = 3e-05
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +1
Query: 364 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYQ--TGSG 537
S ++ P + E A+ + + G+++ TP+Q + + Q TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 538 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELARQIQQVAADFGHTSYVR 699
KTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 502 GKI*LAYQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELARQI 657
G + ++ TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.018
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 606
+ + G++ P+ +Q P ++ G L ++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 607 GPIA-LVLAPTRELARQIQQVAADFGHTSYVRNTCVF 714
G ++ LVL TRELA QI+ A F T VF
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVF 154
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELARQI 657
TG GK+L++++PA++ Q P + + LVL P L + +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELARQI 657
TG GK+L++++PA++ Q P + + LVL P L + +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.88
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 250 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 77
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 76 HDYFSDLVEDVYLNYGFFLTQG 11
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 459 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 334
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 496 MSGK-I*LAYQTGSGKTLAYILPAIV 570
+SGK + + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVS 366
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 94 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 14
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 448 PLSLHLVAHNQENL--LLQSIE 389
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,925
Number of Sequences: 5004
Number of extensions: 63974
Number of successful extensions: 223
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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