Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021964
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 151 4e-37
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 2.8
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 3.7
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical pr... 27 8.6
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 8.6
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 151 bits (366), Expect = 4e-37
Identities = 72/84 (85%), Positives = 80/84 (95%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+
Sbjct: 79 RLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRR 138
Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
QVV++PSFIVRLDS KHIDFSL+S
Sbjct: 139 QVVDVPSFIVRLDSQKHIDFSLQS 162
Score = 127 bits (306), Expect = 8e-30
Identities = 59/75 (78%), Positives = 68/75 (90%)
Frame = +2
Query: 29 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 208
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 209 EEKDPKRLFEGNALL 253
E+KDPKRLFEGNALL
Sbjct: 63 EDKDPKRLFEGNALL 77
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 331 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSH 510
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164
Query: 511 SVEVVLDVSRGR 546
+ V+D + R
Sbjct: 165 IKKHVMDYNNTR 176
>Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical
protein F45D3.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 285 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 455
KTDE A S+ D G +SA A V + P + S NFD K SC C PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 448 CSQLACGHEYAFAGSKFWHDG 386
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 451 GCSQLACGHEYAFAGSKFWH 392
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Frame = +1
Query: 253 TRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG-LAKSIHHARILIRQRHIRV 429
++LVR V+ E QM + + +I L+R + +A L +H + I + R+
Sbjct: 786 SKLVR--VVQEIQMWQEEAI--EIIRMLDRTQPASIQEANELIDRVHDLQQTIEHKSARI 841
Query: 430 R--KQVVNIPSFIVRLDSGKHIDFSLKSHSVEV 522
+ K++ +P F+ +++ +H+ LK +VE+
Sbjct: 842 QEVKKMSQVPEFVHKMEEVEHVQEQLKHLTVEL 874
>Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical
protein R05H5.1 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 63 VTYVFENTDGTLLFTILASSH 1
+ YVF+N+D LLF IL H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +1
Query: 319 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 444
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +1
Query: 319 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 444
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,578
Number of Sequences: 27780
Number of extensions: 273794
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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