Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021960
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 39 0.001
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 38 0.002
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.003
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.006
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 33 0.060
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.060
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.18
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.32
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 30 0.42
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 30 0.42
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.56
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 29 0.56
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 29 0.74
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.74
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.74
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 29 0.74
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 28 1.7
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.7
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 28 1.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 28 1.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 3.0
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 26 5.2
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 5.2
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 5.2
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 6.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 6.9
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.9
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 306 VNEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPVC 440
++ + C +C Y+ A I C H+FC CI +L+ CP C
Sbjct: 23 LDSSLRCLICHEYF-RAPLITSCSHTFCSFCIRDYLREHPMCPAC 66
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 324 CPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPVCEMMINSAK 464
C LC + I EC H FC SCI KS CP+C + +K
Sbjct: 256 CSLCMEF-IHCPAATECGHIFCWSCINGWTSKKSECPLCRAFSSPSK 301
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 303 EVNEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPVCEMMIN 455
+ H C +CR I I C H +C C+ LK S CP+C+ +N
Sbjct: 1085 KAESHQICIICRDI-IKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLN 1134
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 306 VNEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPVCEMMINS 458
V+ + C +C G D + C H+FC C+++ L CP C + S
Sbjct: 163 VSRELECQICFGMLYDPV-VSPCGHTFCGPCLMQALTQSPQCPTCRFGLPS 212
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 35.9 bits (79), Expect = 0.006
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 303 EVNEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPVCEMMI 452
++ + + CP+C + C H++C C++ LK CP C +
Sbjct: 78 KIKKTLECPICTEA-LQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.7 bits (71), Expect = 0.060
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 285 QRTLLGEVNEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKS-----YCPVC 440
++T+ E E+I C +C DA C H+FCR C+ +++ A CP C
Sbjct: 698 RKTVDIENQENIVCKICDEVAQDAIES-RCHHTFCRLCVTEYINAAGDGENVNCPSC 753
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 32.7 bits (71), Expect = 0.060
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 369 ECLHSFCRSCIIKHLKAKS--YCPVCEMMINSAKPN 470
+C H++C +CI+ LK + CP+C+ I A P+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICKHRIRFALPD 247
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 31.1 bits (67), Expect = 0.18
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 363 IVECLHSFCRSCIIKHLKAKSYCPVC 440
+ C H + R C+++ ++ +S CPVC
Sbjct: 644 LTPCHHLYHRQCLLQWMETRSICPVC 669
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 318 ITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAK-SYCPVCE 443
+ C +C + I C H+FC +C+ + K S CP CE
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCE 679
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.9 bits (64), Expect = 0.42
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 324 CPLCRGYYIDATTIVECLHSFCRSCIIKHLK 416
CP+C I ++ C H+ C C+ +H++
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCLSEHIQ 907
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 318 ITCPLCRGYYI--DATTIVECLHSFCRSCIIKHL-KAKSYCPVCEMMINSAKP 467
+ C +C + D + C H F R CI K + + CP C + KP
Sbjct: 319 VECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVPPPKP 371
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 324 CPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKS-YCPVC 440
C +C I C H FC CI K ++ + CP+C
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 318 ITCPLCRGYYID----ATTIVECLHSFCRSCIIKHLKAKSYCPVC 440
+TCP+C + T + C H F ++C+ K L+ CP+C
Sbjct: 105 LTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLC 149
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 29.1 bits (62), Expect = 0.74
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 309 NEHITCPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSY-CPVC---EMMINSAKPNIK 476
N + C LC+ +A C FC CI L + CP C ++++++ P+ +
Sbjct: 277 NISLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQ 336
Query: 477 LDKALQDIV 503
+ ++ +V
Sbjct: 337 KQREIEAVV 345
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 312 EHITCPLCRGYYIDATTIVECLHSFCRSCI 401
E + C LC + IV C H CR C+
Sbjct: 742 ETLQCSLCMDVVAELLIIVPCGHFLCRECL 771
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 372 CLHSFCRSCIIKHLKAK-SYCPVCEMMINSAKPNIKLDKALQDIV 503
C H FC C+I K K +CP+C + +D AL + +
Sbjct: 375 CSHVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNFM 419
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 646 TSSGLKIILSVSSPRCSGVAVAACPGL 566
T SG I++S ++P CS A CP L
Sbjct: 1108 TRSGSVIVVSPTAPACSSTPFAECPNL 1134
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 554 MLPPFHFFLEEP--QAQVVDYVLQCFVKFDIG 465
+L HF L E VVDYV +CFV F+ G
Sbjct: 342 LLLKIHFLLFESFTAESVVDYVRRCFVAFEKG 373
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Frame = +3
Query: 324 CPLCRGYYIDA---TTIVECLHSFCRSCIIKHLKAKSYCPVCE---MMINSAKPNIKLDK 485
CP+C Y ++ + C H + C ++++ CP C + +NS + ++
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINVNSLFRILDMEI 330
Query: 486 ALQDIVYNLCLWL 524
Q + Y W+
Sbjct: 331 ERQPMPYPYNTWI 343
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = +3
Query: 324 CPLCRG-YYIDATTIV----ECLHSFCRSCIIK-HLKAKSYCPV--CEMMINSAK 464
CPLC+ Y++ + EC H C SC+ + + CP C ++ AK
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKILRKAK 67
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 372 CLHSFCRSCIIKHL---KAKSYCPVCEMMINSAK 464
C H FC CI+ L A CPVC ++ K
Sbjct: 221 CGHIFCNFCILSALGTTAATQKCPVCRRKVHPNK 254
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 309 NEHITCPLCRGYYIDATTIVECLHSFCR 392
+EHI+C L +G YID ++ C+ F +
Sbjct: 1334 HEHISCVLTQGAYID---LISCITKFAK 1358
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 282 PQRTLLGEVNEHITCPLCRGYYIDATTIVE--CLHSFCRSCIIKHLKAKSYCPVCEMMIN 455
P + L+ E E C +C + +++ C H F +CI L+ C +C ++
Sbjct: 385 PPKELIDEEGE---CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVD 441
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 597 EQRGEDTERIIFSPE 641
E RGED ER++ SPE
Sbjct: 160 EFRGEDAERVLLSPE 174
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 372 CLHSFCRSCIIKHLKA--KSYCPVC 440
C H F SC+ K K+ S CP+C
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -3
Query: 497 VLQCFVKFDIGFCRIYHHFTYRTVALCFKVFNNTTTTKGMQAFHYCGRIYVVP 339
+L V IGF Y F T+ C KV + T + F + + VP
Sbjct: 353 ILASIVVSQIGFSSAYISFVASTLQACVKVISTTHREYHLAVFIFIQFLVFVP 405
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = +3
Query: 321 TCPLCRG-YYIDATTIVECLHSFC-RSCIIKHL----KAKSYCPVCEMMINSAKPN 470
TCP C + T++ C + R C + L KA YC VC ++ P+
Sbjct: 592 TCPACEATVQFNNTSLATCDNGHVWRRCSVTMLLLSQKAAKYCAVCNSIVAIFNPS 647
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 647 DIFRTENYSFCVFTSLFWCGCCGLSRPRGI 558
++F T+NY+ +FT+L + G ++ RG+
Sbjct: 1372 EVFVTQNYANSIFTNLTYGGARYIATGRGL 1401
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 324 CPLCRGYYIDATTIVECLHSFCRSCIIKHLKAKSYCPV 437
CP C A + C H +C SC+++ ++ + V
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVETPTAAEV 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,839
Number of Sequences: 5004
Number of extensions: 70343
Number of successful extensions: 187
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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