Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021959X
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 95 7e-21
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 66 4e-12
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 54 2e-08
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 46 2e-06
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 44 1e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 44 2e-05
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 40 2e-04
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.29
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 2.7
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 26 2.7
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 26 3.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 4.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 6.2
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 94.7 bits (225), Expect = 7e-21
Identities = 42/63 (66%), Positives = 50/63 (79%)
Frame = +1
Query: 88 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEFPHIR 267
MFRNQYD D T WSPQGRLHQVEYA+EA+K GSAT+GL +K +AVL+ALKR E +
Sbjct: 1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ 60
Query: 268 RKL 276
+KL
Sbjct: 61 KKL 63
Score = 52.0 bits (119), Expect = 5e-08
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 338 SRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
S YM+ E L+ + P+PV RL+S V K QI TQ Y +RP GVG LV
Sbjct: 85 SNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLV 134
Score = 41.1 bits (92), Expect = 9e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3
Query: 228 SVETRCERISAYQKKIIPIDEHIGIXTPGLTAEARM 335
+++ E +S+YQKK+I ID+HIGI GL +AR+
Sbjct: 48 ALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARV 83
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 65.7 bits (153), Expect = 4e-12
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +1
Query: 88 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEF--PH 261
M R++YD V +SP+GRL QVEYA+EA+KLGS IG+K KD VL KR S H
Sbjct: 3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESH 62
Query: 262 IRRKLF 279
KLF
Sbjct: 63 SVEKLF 68
Score = 28.7 bits (61), Expect = 0.50
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 267 KKIIPIDEHIGIXTPGLTAEAR 332
+K+ ID HIG GLTA+AR
Sbjct: 65 EKLFEIDSHIGCAISGLTADAR 86
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +2
Query: 344 YMRTECLNHRYSHDAPMPVGRLISSVGN------KMQICTQRYDKRPLGVGLLVA 490
+ R + NHR+++D P + S+ + + + +R RP GV LL+A
Sbjct: 91 HARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIA 145
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
YDS T++SP+GRL+QVEYA+EA+ +G+ KD VL A K+ S+
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSK 54
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 46.4 bits (105), Expect = 2e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 97 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
++Y +T +SP G+L Q+EYA+ AV G ++G+K D VL K+ SE
Sbjct: 3 DKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSE 54
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 395 PVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
P L+ + + MQ TQ RP GV LLVA
Sbjct: 106 PTKILVQEIASVMQESTQSGGVRPFGVSLLVA 137
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAV-KLGSATIGLKNKDYAVLIALKR 240
+D +TV+SP+GRL+QVEYA +A G ++G+ K+ A +I+ K+
Sbjct: 7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKK 53
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGL-LVA 490
R+E Y + PMP L + N Q+ TQR RPLGV + LVA
Sbjct: 93 RSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVA 140
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEFPHI 264
YD ++V+SP GRL QVEY EAV+ G+ I L+ + V+ ++ V + ++
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNV 57
Score = 28.3 bits (60), Expect = 0.66
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R E NH+ + P+ + L V Q TQ RP GV L+A
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIA 135
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +1
Query: 124 WSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVS 249
+SP GRL Q EYA +AV+ S IG+K +D V++AL++ V+
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCED-GVILALEKVVT 54
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R E + R ++ +P+P + +GN +Q+ T RP GV VA
Sbjct: 92 RDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVA 138
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.29
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -2
Query: 302 NSNMFINRNNFLLICGNSLTARFNAINTA*SLFFRPMVAEPSFTASIAYST*WRRP*GLH 123
N+N RN + +SL + FN++N SL P + S+ + R+P GLH
Sbjct: 799 NTNNLSERNASSNLLNSSLFSSFNSVNPLISL--EPNPLNRTLNNSVNLTDFGRKPNGLH 856
Query: 122 TVTSL 108
+ +SL
Sbjct: 857 SPSSL 861
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 2.7
Identities = 25/84 (29%), Positives = 33/84 (39%)
Frame = -2
Query: 407 DVQLALEHHENIGD*DTLCACSDSHTSFCSETWCXNSNMFINRNNFLLICGNSLTARFNA 228
D QL L H I TLC C + + C S + + L + SL +
Sbjct: 271 DSQLFLHLHSRIVQ--TLC-CFSLNFIYHGLPICEKSKHILMSSINLTL--GSLKKTYTV 325
Query: 227 INTA*SLFFRPMVAEPSFTASIAY 156
NTA SLFF + P A + Y
Sbjct: 326 ANTAISLFFLSLFVLPKTVAGLFY 349
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 299 NXYTRSHCRSSYASRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQI 439
N T+ CR Y Y+ ++C S + P PV R+ + + +I
Sbjct: 95 NARTKEECRDHYLKTYIESDCY-PLASVELPGPVDRIAFAARKRARI 140
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 238 VSTLSTPHSPYSSDQWLQNQVSQLPL 161
++T P S Y S +W + QLPL
Sbjct: 236 IATSEQPISAYHSGEWFEKPSEQLPL 261
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 210 GLCGVDSVETRCERISAYQKKIIPIDEHIGIXT 308
GLC +D + + E + A ++++ + EH I T
Sbjct: 829 GLCNIDVPDDKREVVEAAIEELLTVYEHFDIAT 861
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 232 TLSTPHSPYSSDQWLQNQVSQLPLH 158
T ++P++ S QW+++ V Q P+H
Sbjct: 253 TTTSPNAIIRSVQWIRSFVPQAPIH 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,794
Number of Sequences: 5004
Number of extensions: 40637
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -