Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021959X
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 63 1e-10
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 44 3e-09
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 53 1e-07
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 52 2e-07
06_01_0539 + 3869156-3869908 52 2e-07
06_01_0529 + 3831100-3831852 52 2e-07
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 50 8e-07
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 45 4e-05
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 44 7e-05
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 38 0.004
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 32 0.29
06_01_0479 + 3419657-3420337 29 2.0
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 29 2.0
11_01_0726 - 5990764-5990834,5990916-5990985,5991096-5991243,599... 28 4.7
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 4.7
06_03_0610 - 22715637-22716797 27 6.2
03_02_0333 + 7566644-7566995,7567432-7567463,7568301-7568457,756... 27 6.2
04_04_0847 - 28673818-28673892,28674603-28674671,28674998-286751... 27 8.2
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVS 249
+YD V +SP+GRL QVEYA+EA+KLGS IGLK KD VL KR S
Sbjct: 20 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTS 69
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 267 KKIIPIDEHIGIXTPGLTAEARMRV 341
+KI+ IDEHIG GL A+AR V
Sbjct: 78 EKIMEIDEHIGCAMSGLIADARTLV 102
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 344 YMRTECLNHRYSHDAPMPV---GRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
+ R E NHR+S+ PM V + I + + + RP GV LL+A
Sbjct: 104 HARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIA 155
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 43.6 bits (98), Expect(2) = 3e-09
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +2
Query: 338 SRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 436
SR++R+EC+NH + +DAP+PV RL + +K Q
Sbjct: 60 SRFLRSECINHAFVYDAPLPVSRLALRLADKAQ 92
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +1
Query: 163 MEAVKLGSATIGLKNKDYAVLIALKRAVSEFPHIRRKLF 279
MEAVK GSA +GL+++ +AVL A +A SE +RK+F
Sbjct: 1 MEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVF 39
Score = 34.7 bits (76), Expect(2) = 3e-09
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 431 MQICTQRYDKRPLGVGLLVA 490
+Q+CTQR KRP GVGLLVA
Sbjct: 118 LQVCTQRSWKRPYGVGLLVA 137
Score = 30.3 bits (65), Expect = 0.88
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 252 ISAYQKKIIPIDEHIGIXTPGLTAEARM 335
+S++Q+K+ + +H G+ GLTA+ R+
Sbjct: 31 LSSHQRKVFRVADHAGVALAGLTADGRV 58
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEFPHIR 267
+YD +TV+SP G L QVEYA+EAV+ G+A +G++ D VL K++ + R
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSR 58
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 219 GVDSVETRCERISAYQKKIIPIDEHIGIXTPGLTAEARMRV 341
GV+ T + S +KI +D HI + GL A+AR+ +
Sbjct: 45 GVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLI 85
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEFPHIR 267
+YD +TV+SP G L QVEYA+EAV+ G+A +G++ D VL K++ + R
Sbjct: 73 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSR 128
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
R EC +HR + + P+ V + + Q TQ RP G+ L+
Sbjct: 159 RVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI 204
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 219 GVDSVETRCERISAYQKKIIPIDEHIGIXTPGLTAEARMRV 341
GV+ T + S +KI +D HI + GL A+AR+ +
Sbjct: 115 GVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLI 155
>06_01_0539 + 3869156-3869908
Length = 250
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
+YDS T++SP+GRL+QVEYAMEA+ + +G+ D VL+ K+ S+
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSK 54
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R + S+ P+PV +L+ S+ + Q TQ RP GV L A
Sbjct: 91 RLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFA 137
>06_01_0529 + 3831100-3831852
Length = 250
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
+YDS T++SP+GRL+QVEYAMEA+ + +G+ D VL+ K+ S+
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSK 54
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R + S+ P+PV +L+ S+ + Q TQ RP GV L A
Sbjct: 91 RLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFA 137
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 50.4 bits (115), Expect = 8e-07
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVK-LGSATIGLKNKDYAVLIALKR 240
YD +T++SP+GRL+QVEYA +AVK G +IG++ KD ++ K+
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKK 55
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
R E R+ MPV L + +K Q+ TQ RPLGV +V
Sbjct: 95 RNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMV 140
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
YD VT +SP GR+ QVEYA +AV +G+K KD VL K S+
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSK 57
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
YD VT +SP GR+ QVEYA +AV +G+K KD VL K S+
Sbjct: 8 YDLSVTTFSPDGRVFQVEYAGKAVDNSGTVVGIKCKDGIVLGVEKLVTSK 57
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
++E ++ + PMPV L V + + +CT + RP G G+++
Sbjct: 93 KSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVIL 138
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 97 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLK 204
+QY +T +SP G+L Q+E+A+ AV G ++G+K
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIK 39
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 341 RYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R R + + + +PV +L+ MQ TQ RP GV LL+A
Sbjct: 111 RKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIA 160
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = +1
Query: 109 SDVTVW------SPQGRLHQVEYAMEAVKLGSATIGLK 204
SD VW SP G+L Q+E+A+ AV G ++G+K
Sbjct: 32 SDALVWLPFRCCSPSGKLVQIEHALTAVGSGQTSLGIK 69
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 341 RYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R R + + + +PV +L+ MQ TQ RP GV LL+A
Sbjct: 148 RKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIA 197
>06_01_0479 + 3419657-3420337
Length = 226
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R + S+ P+PV +L+ S+ + Q TQ RP GV L A
Sbjct: 67 RLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFA 113
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 298 PICSSIGIIFF*YAEIRSQRVSTLSTPHSPYSSDQWLQNQVSQLPLHTPLDGDGLED 128
P+C+ G F Y + S R + L +PYS + W N + + P++T +ED
Sbjct: 126 PMCN--GPPFMSYGQTASNR-NVLYQNLTPYSFNAWASNNMPRNPVYTSYHPTAIED 179
>11_01_0726 -
5990764-5990834,5990916-5990985,5991096-5991243,
5991320-5991432,5991695-5991766,5991857-5991984,
5992290-5992485,5992758-5992937,5993032-5993172,
5993408-5993572,5993952-5994098,5994205-5994294,
5994417-5994623,5994673-5995028,5995374-5995506
Length = 738
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 220 VLIALKRAVSEFPHIRRKLFLLMNILEXLHQVSLQKLVCES 342
V I ++R E P I R LFL + L+ +SLQKL C +
Sbjct: 308 VAIKVQRPGIE-PIIYRDLFLFRTLASFLNGISLQKLGCNA 347
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 55 NCTFLN*IKLKMFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIAL 234
N TFL L +F N DV S RLH +E A G +GL N V +++
Sbjct: 100 NLTFLQ--SLDLFNNTLSGDVYFTSQLHRLHYLELAYNDFS-GDLPVGLCNCSNLVFLSV 156
Query: 235 K 237
+
Sbjct: 157 E 157
>06_03_0610 - 22715637-22716797
Length = 386
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 304 LHQVSLQKLVCESLHAHRVSQSPIFS*CSNASW 402
LH+ +QKL+ L A R+ QSP S+ W
Sbjct: 222 LHKAEIQKLMACLLWADRLDQSPYAEFMSSTHW 254
>03_02_0333 +
7566644-7566995,7567432-7567463,7568301-7568457,
7568568-7568740,7568872-7568973,7569053-7569199,
7569274-7570248
Length = 645
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 277 IIFF*YAEIRSQRVSTLSTPHSPYSSDQWLQNQ 179
+IFF A+ +++ S P++SDQW +Q
Sbjct: 234 VIFFQNADKTPMKITVASGSLQPFTSDQWSMHQ 266
>04_04_0847 -
28673818-28673892,28674603-28674671,28674998-28675102,
28675206-28675279,28676007-28676052
Length = 122
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 225 QHRIVLILQTNGCRTKFHSFHCILHLMETALRTPYCDVAIVLVPEHFKF 79
Q + V +L R + S CIL L+ +L CD I L EHF F
Sbjct: 47 QFQFVQLLVIMHPRDRLESILCILLLV--SLFMTLCDAPIALGGEHFNF 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,880
Number of Sequences: 37544
Number of extensions: 253697
Number of successful extensions: 677
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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