Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021959X
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 54 6e-08
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 38 0.006
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 34 0.073
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.90
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45) 29 2.1
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14) 28 3.6
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 27 8.4
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 54.0 bits (124), Expect = 6e-08
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEF--PHIRRKL 276
YD +TV+SP G L QVEYA EAVK GS +G++ + VL ++AV++ P RK+
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKI 64
Query: 277 FLL 285
L
Sbjct: 65 CTL 67
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
R EC +H+ + + P+ + + + Q TQ +RP G+ L+
Sbjct: 90 RVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLI 135
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
+YD + +SP GR+ QVEYA +AV+ I ++ KD V K +S+
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSK 186
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 267 KKIIPIDEHIGIXTPGLTAEARMRVATCAQSVS 365
K+I ID HIG+ GL A++R VAT + +
Sbjct: 194 KRIFHIDTHIGMAIAGLIADSRQIVATAREEAA 226
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSAT-IGLKNKDYAVLIALKRAVSEFP 258
+D +T++SP+GRL+ + G T +G++ D AV++ K+ P
Sbjct: 9 FDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKKVPLPIP 61
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
R E N +Y +PV L + + Q+ TQ + RPLG G+++
Sbjct: 73 RYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMIL 118
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLG 472
R E N +Y +PV L V + Q+ TQ + RPLG
Sbjct: 36 RYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQV 153
+D +T++SP+GRL+QV
Sbjct: 9 FDRHITIFSPEGRLYQV 25
>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
Length = 762
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 232 LKRAVSEFPHIRRKLFLLMNILEXLHQVSLQKLVCESLHAHRVSQSPI 375
++RA FP F++ + L VS+ L+C SL +R+ SP+
Sbjct: 76 IERATGGFPFGSIMCFMVYPLQTVLMAVSVITLLCMSLERYRIVMSPL 123
>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 323 RSSYASRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQIC-----TQRYDKRPLGV 475
+ Y +T + Y HD+ + +G +++ G K Q+C T+ Y K G+
Sbjct: 193 KDPYTDHRKQTGAVYTDYYHDSDLTIGSVLNIWGRKFQVCDCDDFTKAYYKSKYGI 248
>SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14)
Length = 579
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 306 TPGLTAEARMRVATCAQSVSITDILMMLQCQLDVSSRQLVTKCRFVPRDMTSDPWVW 476
T L+ + R +A + ++ +I +L C ++++ R+ VT C R+ +S V+
Sbjct: 220 TRELSRDPRFEIAKRGEQLTGDEIKEVLACNMEIAVRRNVTNCTKCSREDSSTDLVY 276
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 347 CSDSHTSFCSETWCXNSNMFINRNNFLLICGNSLTARFNAIN 222
CS S++S+C C + N NF +C T R+ I+
Sbjct: 948 CS-SNSSWCEPNPCISGNCTDTGTNFTCLCNPGFTGRYCEID 988
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,517,254
Number of Sequences: 59808
Number of extensions: 302716
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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