Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021959X
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 96 1e-20
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 63 9e-11
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 56 1e-08
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 49 2e-06
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical p... 29 1.8
AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical ... 29 2.4
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 27 5.6
Z81051-1|CAB02862.3| 677|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 27 9.8
AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like pro... 27 9.8
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 96.3 bits (229), Expect = 1e-20
Identities = 41/64 (64%), Positives = 56/64 (87%)
Frame = +1
Query: 88 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEFPHIR 267
MFRNQYD DVTVWSPQGRLHQVEYA+EA+K GSAT+G+K++ +AV++ALKRA ++ +
Sbjct: 1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ 60
Query: 268 RKLF 279
+K++
Sbjct: 61 KKVY 64
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +2
Query: 338 SRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
+RY++TEC + R+ + +P+ +L S+ K+Q TQ Y +RP GVG+L+A
Sbjct: 85 ARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIA 135
Score = 30.3 bits (65), Expect = 0.79
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 252 ISAYQKKIIPIDEHIGIXTPGLTAEARM 335
+S++QKK+ ID H G+ GL ++ R+
Sbjct: 56 LSSHQKKVYEIDTHAGVSIAGLLSDGRI 83
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 63.3 bits (147), Expect = 9e-11
Identities = 29/53 (54%), Positives = 40/53 (75%)
Frame = +1
Query: 94 RNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE 252
R++YD V +SP+GRL QVEYA+EAVKLGS +IG+K + +L A KR+ S+
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSK 57
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 267 KKIIPIDEHIGIXTPGLTAEARMRV 341
+KI +D+HIG+ GL A++R V
Sbjct: 65 EKISKVDQHIGVTFAGLIADSRTLV 89
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = +1
Query: 97 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAV 246
N+YD +T++SP G L QVEYA EAVK GS +G++ KD V+ K+++
Sbjct: 2 NRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSI 51
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLV 487
R EC +++ + + P+ V + + N Q TQ +RP G+ +L+
Sbjct: 89 RIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLI 134
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 100 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAV 246
+YDS T++SP+GRL+QVEYAMEA+ +G+ + + V+ A ++ V
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNV 52
Score = 35.1 bits (77), Expect = 0.028
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 344 YMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLL 484
++R ++R S+ MPV +L+ ++ N+ Q TQ KRP GV LL
Sbjct: 89 HLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLL 135
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 97 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVL 225
+ Y +T +SP G+L Q+EYA+ AVK G ++GL+ KD VL
Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVL 45
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 350 RTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVA 490
R + + + MP +L++ + MQ TQ RP G LL+A
Sbjct: 87 RKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIA 133
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 43.6 bits (98), Expect = 8e-05
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSAT-IGLKNKDYAVLIALKR 240
+D +T++SP+GR++QVEYA +A+ + T + +K D AV+ KR
Sbjct: 9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKR 55
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 103 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALK 237
YD + +SP GR+ QVEYA +AV I ++ K+ V++A K
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADK 52
>Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical
protein F26H11.2g protein.
Length = 413
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 225 DSVETRCERISAYQKKIIPIDEHIGIXTPGLTA--EARMRVATCAQSVSITDILMMLQCQ 398
D T ++I+ +QK + P H+ TPG + + + C + +QC+
Sbjct: 78 DKTTTPIKKITVFQKPVEPPASHVAFHTPGSATPHDINLSIEHCTCQKIFDASKLYIQCE 137
Query: 399 L 401
L
Sbjct: 138 L 138
>AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical
protein H10E21.5 protein.
Length = 473
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 306 TPGLTAEARMRVATCAQSVSITDILMMLQCQ 398
TPG+T E + A C + D++ +L C+
Sbjct: 216 TPGMTQELQSDCAVCLDPYQLQDVIRLLPCK 246
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 232 TLSTPHSPYSSDQWLQNQVSQLPLHTPLDGDGLED 128
T+++ H+ + Q +QN++S +P H P G E+
Sbjct: 345 TITSVHAKSHNVQIVQNKISSVPSHLPTSNGGKEN 379
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 232 TLSTPHSPYSSDQWLQNQVSQLPLHTPLD 146
TL P +P D LQN + Q+PL T L+
Sbjct: 422 TLDLPSAPLYRDVQLQNIIPQVPLSTLLE 450
>Z81051-1|CAB02862.3| 677|Caenorhabditis elegans Hypothetical
protein C55A6.2 protein.
Length = 677
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 246 ERISAYQKKIIPIDEHIGIXTPGLTAEARMRVATCAQSVSITDI 377
E S Y KKI E P + + AR+R +CA+ + +
Sbjct: 605 EEASEYTKKITQEGETYACKLPVIRSTARLRTKSCAEFYEVRKV 648
>Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical
protein C44H4.5 protein.
Length = 386
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 293 MFINRNNFLLICGNSLTARFNAIN 222
M IN++ ++L CGNSL N+ N
Sbjct: 150 MIINQDLYVLNCGNSLAIAMNSEN 173
>Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical
protein R07B7.13 protein.
Length = 410
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 82 LKMFRNQYDSDVTVWSPQGRLHQVEYA 162
LK+ RNQ ++++ ++ G L VEYA
Sbjct: 201 LKLIRNQMNAELAGYAHNGSLAMVEYA 227
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 16 RRYINFMKLIHSRNCTFLN*IKLKMFRNQYDSDVTVWSPQ 135
++ I +K H N TF+ K + DS V +W+ Q
Sbjct: 308 QKCIETLKNAHKNNVTFVTPFKTWIISGAEDSTVKIWNSQ 347
>AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like
protein TAP-1 protein.
Length = 386
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 293 MFINRNNFLLICGNSLTARFNAIN 222
M IN++ ++L CGNSL N+ N
Sbjct: 150 MIINQDLYVLNCGNSLAIAMNSEN 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,136
Number of Sequences: 27780
Number of extensions: 235470
Number of successful extensions: 642
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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