Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021958
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 112 3e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 99 2e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 98 8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 81 1e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.44
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.77
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 1.3
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 29 3.1
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 29 3.1
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 28 7.2
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 28 7.2
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_51907| Best HMM Match : Spectrin (HMM E-Value=0.023) 28 9.5
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 112 bits (270), Expect = 3e-25
Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +3
Query: 261 IDIALWKFETSKYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 440
+D+ L +F+T +T++DAPGH DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 441 TREHALLAFTLGVKQLIVGVNK--MIPLNHHTVSP 539
TREHA+L +LGV QLIV +NK M+ L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 99 bits (238), Expect = 2e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Frame = +3
Query: 258 TIDIALWKFETSKYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 437
T+++ F+T + T++DAPGH F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 438 QTREHALLAFTLGVKQLIVGVNKM 509
QTREHA+LA T GVK L++ VNKM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +2
Query: 131 YKCGGIDKRTIEKFEKEAQETGKGSFKYAWVLDKLKAERE 250
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +2
Query: 497 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 598
+K +D T ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVK-WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.9 bits (233), Expect = 8e-21
Identities = 51/74 (68%), Positives = 53/74 (71%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQETGKGSFKYAWVL 226
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E S +
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59
Query: 227 DKLKAEREVDHNRY 268
KLK E H Y
Sbjct: 60 SKLKFELPCTHKIY 73
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +3
Query: 249 RWITIDIALWKFETSKYYVTIIDAPGHXDFIKNMITGTSQ 368
R ITIDIALWKFET KYYVT+IDAPGH DFIKNMITGTSQ
Sbjct: 21 RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Frame = +2
Query: 641 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARP 766
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRP 100
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 194 GKGSFKYAWVLDKLKAERE 250
GKGSFKYAWVLDKLKAERE
Sbjct: 2 GKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 303 VTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 407
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 142
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 297 YYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 407
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 312 IDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 491
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 492 VGVNKM 509
+ NK+
Sbjct: 123 ILQNKI 128
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -3
Query: 380 SAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDPPHAQPLVCPIPKHI 210
++++ G+ + + S N G + +F PES D + PH +P++ P+P+ I
Sbjct: 1897 ASVAGAGTSPFISSDGSAKPFANAGAKLFEAFGSPESGQDIEEPHFEPII-PLPEKI 1952
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 249 RWITIDIALWKFETSKYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 407
R I++ ++ F + I+D PGH DF ++ + D ++++ G
Sbjct: 63 RGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 62 THINIVVIGHVDSGKSTTTGHLIY 133
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 309 IIDAPGHXDFIKNMITGTSQADCAVLIV 392
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 255 ITIDIALWKFETSKYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAA 398
IT I + + + +D PGH F G D +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 169
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 467 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -3
Query: 287 FELPESNIDCDPPHAQP---LVCPIPKHI*RILYPFPGPPSRTSRWYVC 150
+++PE C P+ P CPIP + LYP P P Y C
Sbjct: 546 YDVPEYLYPCSIPYDVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYLYPC 594
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 629 WHGDNMLEPSTKMPWFKGWQVERKE 703
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 512 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 652
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 437 SNP*ACLARFHPRC-----QTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 685 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 575
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 467 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
>SB_51907| Best HMM Match : Spectrin (HMM E-Value=0.023)
Length = 231
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 74 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQETGKGSFKYAWVLDKLKAEREV 253
+ I + SG G+ + + + + +K E+E ETG G FK KLKAE +
Sbjct: 56 VAAIPEIQSGYEY--GNTLLEDNDLSDQAKDKVEREMNETGDG-FK------KLKAELDA 106
Query: 254 DHNR 265
+H R
Sbjct: 107 EHQR 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,451,165
Number of Sequences: 59808
Number of extensions: 530177
Number of successful extensions: 1742
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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