Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021957
         (614 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6PQ47 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_A1L1Q3 Cluster: Zgc:158237; n=3; Danio rerio|Rep: Zgc:1...    32   9.4  
UniRef50_A5GQA8 Cluster: TRNA nucleotidyltransferase/poly(A) pol...    32   9.4  

>UniRef50_A6PQ47 Cluster: Putative uncharacterized protein; n=1;
           Victivallis vadensis ATCC BAA-548|Rep: Putative
           uncharacterized protein - Victivallis vadensis ATCC
           BAA-548
          Length = 99

 Score = 33.1 bits (72), Expect = 5.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 476 IFATSSNGFRRGVTHVHLSTLEQRHANRRVCVAVLVSRWTAY 601
           +F  S  G  +G THVH  T   RH +R V + V     + Y
Sbjct: 32  LFWESRRGIPKGTTHVHARTCRNRHRHRCVLLKVFTGESSKY 73


>UniRef50_A1L1Q3 Cluster: Zgc:158237; n=3; Danio rerio|Rep:
           Zgc:158237 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 531

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 454 VPDATRSYFCHQQQRFPSRG-DACAPEYPG-TASCKSAGVCSS 576
           VPD  R+ F  QQ+   SRG D   P  PG ++SC S   C S
Sbjct: 324 VPDGRRAPFPPQQRSSSSRGIDTQTPSVPGRSSSCSSLSPCPS 366


>UniRef50_A5GQA8 Cluster: TRNA nucleotidyltransferase/poly(A)
           polymerase; n=1; Synechococcus sp. RCC307|Rep: TRNA
           nucleotidyltransferase/poly(A) polymerase -
           Synechococcus sp. (strain RCC307)
          Length = 410

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 370 WNRSLEHNYTREILRLMTTL-SVPSTRTLVPDATRSYFCHQQQRFPSRG 513
           W  +++ N++ E L+L+  L  VP    L+  A R    H+QQ+  SRG
Sbjct: 262 WGHAIDPNWSAEELKLVGLLWLVPHQNNLLAIAKRLQLAHRQQQLLSRG 310


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,589,865
Number of Sequences: 1657284
Number of extensions: 11510314
Number of successful extensions: 26793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26775
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)