Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021957
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669...    28   5.1  
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    28   5.1  
10_01_0287 - 2982618-2982810,2983111-2983196                           27   8.9  
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    27   8.9  

>12_01_1112 -
           11866376-11866447,11866528-11866662,11866772-11866921,
           11867263-11867338,11867426-11867559,11867655-11867747,
           11868456-11868589,11868696-11868744,11869271-11869441,
           11870291-11870452
          Length = 391

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = -2

Query: 571 YTHPPICMTLFQGTQVHMRHPSTETVAAGGKNNCAWHPVQECE*TVQIKWSLISISHEYN 392
           Y  P +C TL     +H+R   T    +          V      + I W L+ ++ EY 
Sbjct: 151 YEDPQLCATLASDIYMHLREAETRKHPSTDFMETLQKDVNPSMRAILIDW-LVEVAEEYR 209

Query: 391 YVP 383
            VP
Sbjct: 210 LVP 212


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = -2

Query: 571 YTHPPICMTLFQGTQVHMRHPSTETVAAGGKNNCAWHPVQECE*TVQIKWSLISISHEYN 392
           Y  P +C TL     +H+R   T    +          V      + I W L+ ++ EY 
Sbjct: 231 YEDPQLCATLASDIYMHLREAETRKRPSTDFMETIQKDVNPSMRAILIDW-LVEVAEEYR 289

Query: 391 YVP 383
            VP
Sbjct: 290 LVP 292


>10_01_0287 - 2982618-2982810,2983111-2983196
          Length = 92

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 574 CYTHPPICMTLFQGTQVHMRHP 509
           CY H P+   L  G Q+   HP
Sbjct: 38  CYIHKPVYQELLHGDQLRFTHP 59


>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 485 TSSNGFRRGVTHVHLSTLEQRHANR--RVCVAVLVSRW 592
           T +NG+R  VTHV  +T E     R  +V +A+L  +W
Sbjct: 422 TVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGKW 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,565
Number of Sequences: 37544
Number of extensions: 324983
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)