BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021957 (614 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669... 28 5.1 01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738... 28 5.1 10_01_0287 - 2982618-2982810,2983111-2983196 27 8.9 04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861... 27 8.9 >12_01_1112 - 11866376-11866447,11866528-11866662,11866772-11866921, 11867263-11867338,11867426-11867559,11867655-11867747, 11868456-11868589,11868696-11868744,11869271-11869441, 11870291-11870452 Length = 391 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/63 (25%), Positives = 24/63 (38%) Frame = -2 Query: 571 YTHPPICMTLFQGTQVHMRHPSTETVAAGGKNNCAWHPVQECE*TVQIKWSLISISHEYN 392 Y P +C TL +H+R T + V + I W L+ ++ EY Sbjct: 151 YEDPQLCATLASDIYMHLREAETRKHPSTDFMETLQKDVNPSMRAILIDW-LVEVAEEYR 209 Query: 391 YVP 383 VP Sbjct: 210 LVP 212 >01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365, 7389436-7389516,7389692-7389767,7389855-7389988, 7390082-7390174,7390885-7391018,7391125-7391533, 7392381-7392593 Length = 497 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/63 (25%), Positives = 24/63 (38%) Frame = -2 Query: 571 YTHPPICMTLFQGTQVHMRHPSTETVAAGGKNNCAWHPVQECE*TVQIKWSLISISHEYN 392 Y P +C TL +H+R T + V + I W L+ ++ EY Sbjct: 231 YEDPQLCATLASDIYMHLREAETRKRPSTDFMETIQKDVNPSMRAILIDW-LVEVAEEYR 289 Query: 391 YVP 383 VP Sbjct: 290 LVP 292 >10_01_0287 - 2982618-2982810,2983111-2983196 Length = 92 Score = 27.5 bits (58), Expect = 8.9 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -2 Query: 574 CYTHPPICMTLFQGTQVHMRHP 509 CY H P+ L G Q+ HP Sbjct: 38 CYIHKPVYQELLHGDQLRFTHP 59 >04_04_0487 - 25585229-25585540,25585627-25585745,25586029-25586194, 25586295-25586427,25586527-25586618,25586739-25586925, 25587183-25587271,25587318-25587379,25587462-25587567, 25587754-25588052,25588181-25588288,25588369-25588439, 25588792-25588871 Length = 607 Score = 27.5 bits (58), Expect = 8.9 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = +2 Query: 485 TSSNGFRRGVTHVHLSTLEQRHANR--RVCVAVLVSRW 592 T +NG+R VTHV +T E R +V +A+L +W Sbjct: 422 TVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGKW 459 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,289,565 Number of Sequences: 37544 Number of extensions: 324983 Number of successful extensions: 780 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 779 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1478421500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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