Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021957
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35584| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)                   28   6.9  
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)                  28   6.9  
SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)                   28   6.9  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_35584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 285 CCNYYRRNRAVCRKSKTPTQQDVS 356
           CC+YYR       +S+TP QQ VS
Sbjct: 320 CCSYYRTKLTTACQSQTPLQQAVS 343


>SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)
          Length = 152

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 430 IKWSLISISHEYNYVPKNGSTELCQETS 347
           ++W +I +S  Y+     GS +LC +TS
Sbjct: 58  VQWIIIPLSSHYSERTGKGSAQLCSQTS 85


>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
          Length = 1497

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 20  ETCVILSFVNSRLKSFC*FSLFTY 91
           +TCV +  + +RL++ C +S++TY
Sbjct: 537 KTCVTVRTIATRLRTLCIYSIYTY 560


>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
          Length = 505

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 231 RDHSHRRCMTA---RILDLGVCCNYYR 302
           + H H++  +A   + +DLG+CC  YR
Sbjct: 5   KQHFHQKIFSALEEKTIDLGICCGIYR 31


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 613 IILFVRRPSADQHCYTHPPICMTLFQGTQVHMRHPSTETV 494
           I L +R P    HC  HP I +TL   T  H  HP+   +
Sbjct: 645 ITLLLRSP---YHC-EHPAIAITLLLRTPCHCEHPAIANI 680


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 569 HTPADLHDAVPGYSGAHASPLD 504
           H P    DA  GYSG H SP D
Sbjct: 101 HGPRGQTDATGGYSGLHFSPKD 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,188,340
Number of Sequences: 59808
Number of extensions: 397506
Number of successful extensions: 991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)