Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021957
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z36752-6|CAA85327.1|  456|Caenorhabditis elegans Hypothetical
           protein F35H8.5 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 409 LRLMTTLSVPSTRTLVPDATRSYFCHQQQRFP-SRGDACAPEYPGTASCKSAGVCSSA 579
           L  +  L+  +T T VPD T S   HQQQ+   ++  A     P   + + AG+ + A
Sbjct: 296 LNALAGLNPFATATAVPDFTASLIAHQQQQHAVAQQHAAQTASPPATNGQVAGLAAHA 353


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 520  CAPEYPGTASCKSAGVCSSAGQQMD 594
            C P+ PG + C +AG C S  +  D
Sbjct: 1907 CDPDDPGFSCCGAAGYCGSGKEYCD 1931


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,576
Number of Sequences: 27780
Number of extensions: 288152
Number of successful extensions: 727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)