Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021955
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.47 
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   5.8  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 481 VLEELHHRGLSFLIHSISLDHLRRLHQHPHLKVYPLNFQLSWHRDWLMVE 332
           +++E+H R +   +  I + HL  L QHPHLK+  ++  L+  +  L  E
Sbjct: 756 IIDEVHERSIDSDLLLIHVLHL--LKQHPHLKIIIMSATLNAEKFQLYFE 803


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 433 ISLDHLRRLHQH-PHLKVYPLNFQLSWHRDWLMV 335
           IS+DHLR L  H  H     LNF L  ++++L++
Sbjct: 28  ISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLII 61


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 534 IVGVLQDRINNYMAAEKHAKEKGESSRARRF 626
           IV VL+D  ++ ++ E H     E SR R+F
Sbjct: 715 IVDVLKDCDSSILSVESHLPTAAERSRLRKF 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,850
Number of Sequences: 5004
Number of extensions: 35188
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)