BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021955 (681 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.47 SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.5 SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 5.8 >SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1428 Score = 29.5 bits (63), Expect = 0.47 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = -3 Query: 481 VLEELHHRGLSFLIHSISLDHLRRLHQHPHLKVYPLNFQLSWHRDWLMVE 332 +++E+H R + + I + HL L QHPHLK+ ++ L+ + L E Sbjct: 756 IIDEVHERSIDSDLLLIHVLHL--LKQHPHLKIIIMSATLNAEKFQLYFE 803 >SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 85 Score = 27.1 bits (57), Expect = 2.5 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -3 Query: 433 ISLDHLRRLHQH-PHLKVYPLNFQLSWHRDWLMV 335 IS+DHLR L H H LNF L ++++L++ Sbjct: 28 ISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLII 61 >SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2196 Score = 25.8 bits (54), Expect = 5.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 534 IVGVLQDRINNYMAAEKHAKEKGESSRARRF 626 IV VL+D ++ ++ E H E SR R+F Sbjct: 715 IVDVLKDCDSSILSVESHLPTAAERSRLRKF 745 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,157,850 Number of Sequences: 5004 Number of extensions: 35188 Number of successful extensions: 103 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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