Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021955
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    31   0.84 
05_05_0274 - 23755384-23755655,23755780-23756139,23756316-237564...    29   3.4  
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802...    28   7.9  
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    28   7.9  

>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +3

Query: 528 TGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLK 662
           T  +G L  R+   ++ E++  ++G  +R R+F+R +KT++  L+
Sbjct: 5   TAAMGSLLSRLAELLSLEENQLQEGVRNRVRQFSRGLKTMDTTLR 49


>05_05_0274 -
           23755384-23755655,23755780-23756139,23756316-23756474,
           23756757-23757235,23757344-23757475,23757723-23757797,
           23757882-23757950,23758025-23758096,23758196-23758267,
           23758348-23758419,23758526-23758687,23758786-23758857,
           23758955-23759029,23759615-23759686,23759781-23759901,
           23760051-23760138
          Length = 783

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 511 GAQDGKNEAEVLEELHHRGLSFLI 440
           GA + KNE E+L  +HHR L  LI
Sbjct: 644 GAVEFKNEIELLSRVHHRNLVSLI 667


>05_03_0070 -
           8023343-8023528,8023606-8023639,8024013-8024058,
           8024139-8024389,8024473-8026001,8026128-8026496,
           8026582-8026821
          Length = 884

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -3

Query: 550 CKTPTMPVSAPGGGAQDGKNEAEVLE---ELHHRGLSFLIHSISLDHLRRLHQHPHLKVY 380
           C+T      APG     GKN  E+ E    LH   L  +   I    L   ++   +  Y
Sbjct: 735 CQTQHTVTLAPGSDQLKGKNPKEIAEYKKGLHKEKLITVTQYIGRAFLHFQNKRVVMAAY 794

Query: 379 PLNFQLSWHRDWLMVEPFL 323
            L+  +S +   L +EP++
Sbjct: 795 NLSIIISVYSSTLKMEPWV 813


>01_06_1129 +
           34732007-34732091,34732814-34732934,34733012-34733083,
           34733168-34733242,34733348-34733419,34733514-34733675,
           34733780-34733854,34733932-34734003,34734089-34734160,
           34734245-34734313,34734388-34734462,34734557-34734628,
           34734732-34734866,34734946-34735415,34735490-34735648,
           34735741-34735880,34735974-34736193,34736305-34736540,
           34736627-34737130
          Length = 961

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 511 GAQDGKNEAEVLEELHHRGLSFLI 440
           GA + KNE E+L  +HH+ L  L+
Sbjct: 666 GAAEFKNEIELLSRVHHKNLVSLV 689


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,149
Number of Sequences: 37544
Number of extensions: 225855
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)