Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021955
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7)                       45   5e-05
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      30   1.5  
SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021)        30   2.0  
SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45)    30   2.0  
SB_9193| Best HMM Match : FCH (HMM E-Value=1.6)                        29   4.6  

>SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7)
          Length = 363

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +3

Query: 534 IVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLKQAKAG 677
           +   LQ R+  Y  A   AKE+G SS+ARR  R +K   D +K  KAG
Sbjct: 19  VADALQQRLEKYTEAANKAKEEGNSSKARRMGRIVKQYEDAIKCHKAG 66


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 478 LEELHHRGLSFLIHSISLDHLRRLHQHPHLKVYPLNFQLSWHRDWLMV 335
           L  +HHR   +  HS +  H  + + H H   + L++   +H D  ++
Sbjct: 77  LSSIHHRYRDYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFII 124


>SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021)
          Length = 127

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 544 FYRTELIIIWLQKNMQRKRVKAVGLED 624
           FYRT  ++ W+     R RV+A GLE+
Sbjct: 22  FYRTSRLLYWISSKYFRVRVEAKGLEN 48


>SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45)
          Length = 218

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 544 FYRTELIIIWLQKNMQRKRVKAVGLED 624
           FYRT  ++ W+     R RV+A GLE+
Sbjct: 22  FYRTSRLLYWISSKYFRVRVEAKGLEN 48


>SB_9193| Best HMM Match : FCH (HMM E-Value=1.6)
          Length = 458

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 561 NNYMAAEKHAKEKGESSRARRFNRCIK 641
           N +   EK   +KGE   +R++NRC K
Sbjct: 353 NFHQGREKAVNDKGEQMVSRKYNRCTK 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,630
Number of Sequences: 59808
Number of extensions: 261826
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)