Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021955
         (681 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058523-1|AAL13752.1|  816|Drosophila melanogaster LD23056p pro...    49   5e-06
AE014134-2030|AAF53069.1|  816|Drosophila melanogaster CG4713-PA...    49   5e-06
AJ011925-1|CAA09870.1| 2285|Drosophila melanogaster Kakapo protein.    29   5.9  
AJ011924-1|CAA09869.1| 2396|Drosophila melanogaster Kakapo protein.    29   5.9  
AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-P...    29   5.9  
AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-P...    29   5.9  
AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-P...    29   5.9  

>AY058523-1|AAL13752.1|  816|Drosophila melanogaster LD23056p
           protein.
          Length = 816

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +3

Query: 537 VGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLKQAKAG 677
           + +++ R+  Y  AE +AK  G+S +ARRF R +KTL DL +QA AG
Sbjct: 142 LSIIKQRLEMYKQAEANAKTAGDSGKARRFGRGLKTLKDLHRQAAAG 188



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +3

Query: 522 ADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLKQAKAG 677
           A T ++  LQ R+  Y + E  AK +  S +ARRF R +K   D +K  KAG
Sbjct: 357 AATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKLYKAG 408



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 301 GGTSRQRPK-KAPPSANLDAMIAESLKDI 384
           G   + +PK K  P+++LD MIA+SL+D+
Sbjct: 57  GAKPKPKPKAKLLPASDLDKMIADSLRDV 85


>AE014134-2030|AAF53069.1|  816|Drosophila melanogaster CG4713-PA
           protein.
          Length = 816

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +3

Query: 537 VGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLKQAKAG 677
           + +++ R+  Y  AE +AK  G+S +ARRF R +KTL DL +QA AG
Sbjct: 142 LSIIKQRLEMYKQAEANAKTAGDSGKARRFGRGLKTLKDLHRQAAAG 188



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +3

Query: 522 ADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLKQAKAG 677
           A T ++  LQ R+  Y + E  AK +  S +ARRF R +K   D +K  KAG
Sbjct: 357 AATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKLYKAG 408



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 301 GGTSRQRPK-KAPPSANLDAMIAESLKDI 384
           G   + +PK K  P+++LD MIA+SL+D+
Sbjct: 57  GAKPKPKPKAKLLPASDLDKMIADSLRDV 85


>AJ011925-1|CAA09870.1| 2285|Drosophila melanogaster Kakapo protein.
          Length = 2285

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 519  GADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLK 662
            G +  ++ V+Q  I+   +  + A+++ + +   +FN C + +NDLLK
Sbjct: 1495 GRELSLLEVIQREISEAESGYETAEKRIKQAVFEKFNMCEENVNDLLK 1542


>AJ011924-1|CAA09869.1| 2396|Drosophila melanogaster Kakapo protein.
          Length = 2396

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 519  GADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLK 662
            G +  ++ V+Q  I+   +  + A+++ + +   +FN C + +NDLLK
Sbjct: 1606 GRELSLLEVIQREISEAESGYETAEKRIKQAVFEKFNMCEENVNDLLK 1653


>AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-PA,
            isoform A protein.
          Length = 5501

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 519  GADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLK 662
            G +  ++ V+Q  I+   +  + A+++ + +   +FN C + +NDLLK
Sbjct: 1606 GRELSLLEVIQREISEAESGYETAEKRIKQAVFEKFNMCEENVNDLLK 1653


>AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-PB,
            isoform B protein.
          Length = 5390

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 519  GADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLK 662
            G +  ++ V+Q  I+   +  + A+++ + +   +FN C + +NDLLK
Sbjct: 1495 GRELSLLEVIQREISEAESGYETAEKRIKQAVFEKFNMCEENVNDLLK 1542


>AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-PG,
            isoform G protein.
          Length = 5385

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 519  GADTGIVGVLQDRINNYMAAEKHAKEKGESSRARRFNRCIKTLNDLLK 662
            G +  ++ V+Q  I+   +  + A+++ + +   +FN C + +NDLLK
Sbjct: 1495 GRELSLLEVIQREISEAESGYETAEKRIKQAVFEKFNMCEENVNDLLK 1542


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,532,513
Number of Sequences: 53049
Number of extensions: 399400
Number of successful extensions: 1254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)