Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021955
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 353 SRLADGGAFFGLCLL-VPPL 297
           S LADG  F G CL+  PPL
Sbjct: 422 SSLADGARFGGSCLIHGPPL 441


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 353 SRLADGGAFFGLCLL-VPPL 297
           S LADG  F G CL+  PPL
Sbjct: 422 SSLADGARFGGSCLIHGPPL 441


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 549 QDRINNYMAAEKHAKEKGESSRARRF 626
           +  +NN ++ + HAK K    +AR++
Sbjct: 466 ESMLNNGVSIQSHAKAKNTMIKARQY 491


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 549 QDRINNYMAAEKHAKEKGESSRARRF 626
           +  +NN ++ + HAK K    +AR++
Sbjct: 466 ESMLNNGVSIQSHAKAKNTMIKARQY 491


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 549 QDRINNYMAAEKHAKEKGESSRARRF 626
           +  +NN ++ + HAK K    +AR++
Sbjct: 92  ESMLNNGVSIQSHAKAKNTMIKARQY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,368
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)