Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021955
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23220.1 68417.m03349 protein kinase family protein contains ...    28   6.6  
At4g05200.1 68417.m00783 protein kinase family protein contains ...    28   6.6  

>At4g23220.1 68417.m03349 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 542

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 511 GAQDGKNEAEVLEELHHRGLSFLI 440
           GA++ KNE  V+ +LHHR L  L+
Sbjct: 257 GAREFKNEVVVVAKLHHRNLVKLL 280


>At4g05200.1 68417.m00783 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature
          Length = 675

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 511 GAQDGKNEAEVLEELHHRGLSFLI 440
           GA++ KNE +V+ +L HR L+ L+
Sbjct: 384 GAEEFKNEVDVVAKLQHRNLAKLL 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,314,467
Number of Sequences: 28952
Number of extensions: 184608
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)