Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021954
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.49 
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   1.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   1.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.5  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.6  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   8.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.0  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 345  REHHQRCELCYDHSPREDFGAWPSIGNDCVHRTAVGTASR 464
            R+HH  C      +P ++   WP     C+  TA     R
Sbjct: 941  RKHHMPCPSNLVFNPDQNVCDWPENVEGCMQHTAAPPTKR 980


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 252 KATQCQFIDRRYSRQQHLTARNTGSPLHLWCREHHQRCELC 374
           K  +CQ   +R++R  HL        + L   E   RCE C
Sbjct: 8   KPFECQECHKRFTRDHHLKTH-----MRLHTGERPYRCEHC 43


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 291 RQQHLTARNTGSPLHLWCREHHQRCEL 371
           R Q   A    +P+H W   +HQ  ++
Sbjct: 12  RHQQAVAAPANAPMHSWYAGYHQGAQM 38


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 291 RQQHLTARNTGSPLHLWCREHHQRCEL 371
           R Q   A    +P+H W   +HQ  ++
Sbjct: 12  RHQQAVAAPANAPMHSWYAGYHQGAQM 38


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 252 KATQCQFIDRRYSRQQHLTARNTGSPLHLWCREHHQRCELC 374
           K  +CQ   +R++R  HL        + L   E   RCE C
Sbjct: 161 KPFECQECHKRFTRDHHLKTH-----MRLHTGERPYRCEHC 196


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 523 LYSSSRDTGSCPASKSPCPDLDAVP 449
           LY++ +  G+ P S +P P +   P
Sbjct: 301 LYAAKKAAGASPYSGTPTPMMSPAP 325


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 52  YFHQ*IYNNVASY 90
           YFH  + NNV SY
Sbjct: 331 YFHMDLENNVQSY 343


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 595 FSLNNCISRIASMNSPPVFLMVICLYSSSRDTGSCP 488
           F+ +NC +RI   +S P      C   ++  T  CP
Sbjct: 53  FTGSNCQNRINLCDSSPCLNGATCQDHTTHYTCHCP 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,699
Number of Sequences: 336
Number of extensions: 3812
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)