Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021954
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    44   2e-05
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    35   0.014
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    29   0.54 
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    29   0.94 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    29   0.94 
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    27   2.9  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.8  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.0  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    26   5.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   6.6  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.8  

>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 42/75 (56%)
 Frame = +1

Query: 256 LHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVY 435
           +H ASLL DD+ D++ +RRG P ++  +G   +I A N+ +  A      L +P  T + 
Sbjct: 129 IHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNFILARASTAMARLRNPQVTELL 188

Query: 436 TEQLLELHRGQGMEI 480
              + +L RG+ +++
Sbjct: 189 ATVIADLVRGEFLQL 203


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +3

Query: 528 MTIKKTGGLFMLAIRLMQLFSENKS----DFT-NLSAVLGLYFQIRDDYCNLSMREYTEN 692
           +T K +   F L I+   L S N +    D T  LS +LG YFQ++DDY +    +YT  
Sbjct: 193 ITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQDDYLD-CFGDYTVL 251

Query: 693 KSYCEDLTDGKFSFPIIHA 749
                D+ D K ++ + +A
Sbjct: 252 GKVGMDIQDNKCTWLVCYA 270



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 256 LHNASLLIDDIQDNSILRRGIPVAHSIYGVASTIN 360
           L    L+ DDI D SI RRG+   + + GV   IN
Sbjct: 92  LQGCFLMADDIMDQSIKRRGLDCWYLVVGVRRAIN 126


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 468 GHGDLLAGQLPVSLEDEYK-QMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQ 644
           G+G LL G +  S   +Y+ Q    K   L   A+ +  +   N + F+N S +   YFQ
Sbjct: 249 GNGSLLLGAVDTS---KYQGQFVALKQTKLTHYAVSIYSVQFLNSTFFSNYSIITDAYFQ 305

Query: 645 IRDDYCNL 668
            R+ Y  L
Sbjct: 306 TRETYIYL 313


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 211 LEPVVECGS*LRSYLFPWYLLNVCVRHENFLILIFITTSCDSLRHCCRSIDENN 50
           L P  E    +RS+L P+Y    C+   NF+    +     SLR+  +++ +NN
Sbjct: 200 LHPTPESWGFVRSFL-PYYTYGSCLY--NFMAFALLLNVLQSLRNALQAVQKNN 250


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 262 NASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVYTE 441
           +  L +D+IQ  S+L+RGI  + ++    + + AA Y   +A E+ LE    L   V  +
Sbjct: 87  STQLNLDEIQCASLLQRGIEASQNL--DRTPVQAALYFFFLAREQLLECLESLTRVVGLK 144

Query: 442 QL 447
            L
Sbjct: 145 DL 146


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 591 ENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTENKSYCEDLTDGKFSFPI 740
           EN     ++  +LG YFQ++DDY +    + T       D+ D K S+ I
Sbjct: 215 ENLKCAQDILIILGKYFQVQDDYLD-CYGDPTVTGKIGTDILDNKCSWII 263


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/94 (26%), Positives = 39/94 (41%)
 Frame = +3

Query: 438  RTAVGTASRSGHGDLLAGQLPVSLEDEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNL 617
            RT +     + H  LLA      L D       +K   + ++ + L  LF EN  +F   
Sbjct: 1235 RTVIDVVRANRHSPLLAS---TKLRDYAIAYGAEKN--VLVVIVELNGLFEENSLNFN-- 1287

Query: 618  SAVLGLYFQIRDDYCNLSMREYTENKSYCEDLTD 719
                    Q+R D   L++ E  +N S+ +DL D
Sbjct: 1288 --------QLRGDEKTLAISEKNDNMSFVQDLPD 1313


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = +1

Query: 595 TNRTSPICPPCWGCISRSATITATCR*GSTPRTRVTARTSRMGSSASPSYTPS 753
           T  TS    P     S SAT  +     STP T   + TS   SS +PSY  S
Sbjct: 365 TTATSASSTPLTSVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTS 412



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = +1

Query: 595 TNRTSPICPPCWGCISRSATITATCR*GSTPRTRVTARTSRMGSSASPSYTPS 753
           T  TS    P     S SAT  +     STP T   + TS   SS +PSY  S
Sbjct: 479 TTATSASSTPLTSVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTS 526


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 197 NYWLKISEEKLRLVGDIVQSYTMPVY*STIFKTTASYGAEYR*PTPSMVSRAPS 358
           +YW+  S+ ++  V +  +SY   +Y   + +  A Y  +++ PT   V   PS
Sbjct: 137 SYWVDESQGRVLEVSENEKSYRRALYDKFMDRLDAGYYDDFQLPTAEDVIEKPS 190


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 298 SILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVYTEQLLELHRGQ 468
           +I  +G P  +  Y   STIN    AMI + +    L      ++  +++L L RG+
Sbjct: 602 AIWEKGFPKRNPYYKFTSTINRFRKAMIESKDGEAFLNMQSDISIVDKRILLLRRGK 658


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 62  NRSTTMSQAITRSGDKNQDEKILMPYTYIQQVPGKQIRTKLASAFNYWLKISE 220
           N +T+    +TR GD++ D KI++   Y ++ P    R KL+ AF   L I E
Sbjct: 174 NSNTSNGITVTRKGDQSVDVKIML---YPEEHPE---RYKLSKAFANILGIRE 220


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 598 LFSLNNCISRIASMNSPPVFLMVICLYSS 512
           +F+     S+IAS  +PPV ++ IC +++
Sbjct: 141 IFNKAQITSQIASDTAPPVLVLCICAHAA 169


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 613 LVKSDLFSLNNCISRIASMNSPPVFLMVICLYSSSRDT 500
           L +S+LF   N   RI+S  S   F  ++C Y    D+
Sbjct: 73  LAESELFDTLNPAFRISSCPSSNAFASLMCRYERQLDS 110


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 588 SENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTENKSYCED 710
           S+NKS F   +AVL L +++    C  S ++  E   Y  D
Sbjct: 203 SKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLLD 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,485
Number of Sequences: 5004
Number of extensions: 66996
Number of successful extensions: 204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)