Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021954
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 37 0.020
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663... 37 0.020
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 36 0.046
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 33 0.32
11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527 26 1.6
07_03_1039 - 23454130-23454552,23454859-23455536 30 1.7
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 29 4.0
02_05_0247 - 27141859-27142887 29 4.0
11_06_0266 - 21791757-21792982,21793154-21793178 29 5.2
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 29 5.2
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 28 9.2
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 28 9.2
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313... 28 9.2
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 28 9.2
04_04_0092 - 22759791-22760676,22761446-22761813,22762202-227622... 28 9.2
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256... 28 9.2
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 256 LHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANY 372
+H ASL+ DD+ D+S +RRG H +YG + A ++
Sbjct: 219 IHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDF 257
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = +3
Query: 513 DEYKQMTIKKTGGLFMLAIRLMQLFSENKS----DFTNLSAVLGLYFQIRDDYCNLSMRE 680
D+Y + KT L + R +FS + LGL FQ+ DD + +
Sbjct: 304 DDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSA 363
Query: 681 YTENKSYCEDLTDGKFSFPIIHAI 752
K DL G + P+I A+
Sbjct: 364 EQLGKPAGSDLAKGNLTAPVIFAL 387
>05_07_0261 +
28764571-28764733,28766039-28766153,28766241-28766344,
28766571-28766698,28766765-28767328
Length = 357
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 256 LHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANY 372
+H ASL+ DD+ D+S +RRG H +YG + A ++
Sbjct: 109 IHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDF 147
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = +3
Query: 513 DEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTN----LSAVLGLYFQIRDDYCNLSMRE 680
D+Y + KT L + R +FS + LGL FQ+ DD + +
Sbjct: 199 DDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSA 258
Query: 681 YTENKSYCEDLTDGKFSFPIIHAI 752
K DL G + P+I A+
Sbjct: 259 EQLGKPAGSDLAKGNLTAPVIFAL 282
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 35.5 bits (78), Expect = 0.046
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +1
Query: 256 LHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVY 435
+H ASLL DD+ D++ RRG+ + I G ++ A ++ + A LG+ ++
Sbjct: 181 IHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALAALGNTEVVSLM 240
Query: 436 TEQLLELHRGQGMEI 480
+ L G+ M+I
Sbjct: 241 ATAVEHLVTGETMQI 255
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 513 DEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAV----LGLYFQIRDDYCNLSMRE 680
D Y Q T KT L + + + + + + +D + L+ LGL FQ+ DD + +
Sbjct: 266 DYYLQKTYYKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTS 325
Query: 681 YTENKSYCEDLTDGKFSFPIIHAI 752
+ K D+ G + P+++A+
Sbjct: 326 ASLGKGSLTDIRHGIITAPMLYAM 349
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 519 YKQMTIKKTGGL-FMLAIRLMQLFSENK-SDFTNLSAVL---GLYFQIRDDYCNLSMREY 683
Y+++ KT F L + L S K DF+ L +L G+YFQI+DDY +
Sbjct: 260 YRRIVKYKTAYYSFYLPVANALLLSGAKLEDFSGLKDILIEMGIYFQIQDDYLDCFADPN 319
Query: 684 TENKSYCEDLTDGKFSFPIIHAI 752
T K D+ D K S+ I+ A+
Sbjct: 320 TIGK-IGTDIEDHKCSWLIVQAL 341
>11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527
Length = 1015
Score = 25.8 bits (54), Expect(2) = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 12 EAENQYTEYHFLVLFSSIDLQQCRKLSQEVVIKI 113
EAE+ E+ L +DL++C L E + KI
Sbjct: 571 EAEDSVLEFSSYELLRVLDLEECENLKDEHLRKI 604
Score = 23.0 bits (47), Expect(2) = 1.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 102 VIKIKMRKFSCLTHTFSKYQ 161
V+ I++ K CLTH F ++
Sbjct: 644 VLPIQVIKLPCLTHLFGNFK 663
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 256 LHNASLLIDDI--QDNSILRRGIPVAHSIYG 342
+H SL+ DD+ D+ LRRG P H +YG
Sbjct: 138 VHTMSLVHDDLPCMDDDDLRRGKPTCHVVYG 168
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +3
Query: 513 DEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTEN 692
D ++ I + +F I+ + + EN +L +L QIR DY N S+R+ +
Sbjct: 914 DNISKLCITDSMEIFEDHIKTLTILEENGFSVQSLQQILTKLLQIRSDYTN-SLRDGEKL 972
Query: 693 KSYCEDLTDGKFSFPIIHAI 752
K E + D F+ + A+
Sbjct: 973 K---EQIADKAFAVSRVDAL 989
>02_05_0247 - 27141859-27142887
Length = 342
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 256 LHNASLLIDDIQ--DNSILRRGIPVAHSIYGVASTINAAN 369
LH ASL+ DD+ D + RRG P H+ YG + A +
Sbjct: 119 LHAASLVHDDLPCFDAAPTRRGRPSTHAAYGTDMAVLAGD 158
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 301 ILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVYTEQLLELHRGQGMEI 480
+ R +P+ + V TI+AA Y M K + P + + YT + +HR
Sbjct: 151 VYTRSLPIINGSGVVDCTIHAAQYVMSFC--KVILSSPPGSGSAYTVAAISVHRNGAKLA 208
Query: 481 YWR 489
WR
Sbjct: 209 LWR 211
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 591 ENKSDFTNLSAVLGLYFQIRDDY 659
+N D N+ +G YFQ++DDY
Sbjct: 245 DNFGDVKNILVEMGTYFQVQDDY 267
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 497 SSVP*RRIQTDDHQKNRWTVH-ASDTTDAVV*REQIGLHQ 613
SS+P + Q H +RWTV+ A+DT V E + H+
Sbjct: 404 SSMPEKSGQIHLHAAHRWTVNLAADTAPLAVDLESVAAHE 443
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 378 DHS-PREDFGAWPSIGNDCVHRTAVGTASRSGHGDL 482
DH+ P F A S G +RTAV ASR G GD+
Sbjct: 155 DHADPGRTFVAGDSAGGHIAYRTAVRAASREG-GDI 189
>05_01_0397 -
3129679-3130144,3130655-3131104,3132215-3132273,
3133136-3133305,3134655-3134771,3134980-3135166
Length = 482
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 676 GSTPRTRVTARTSRMGSSASPSY 744
G+T RV T R GSS SPSY
Sbjct: 302 GTTRAARVDGDTQRRGSSISPSY 324
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 600 SDFTNLSAVL---GLYFQIRDDYCNLSMREYTENKSYCEDLTDGKFSFPIIHAI 752
SD+ L VL G+YFQI+DDY + K D+ D K S+ I+ A+
Sbjct: 277 SDYVELKNVLIEMGVYFQIQDDYLDCFGDPEVIGK-VGTDIEDYKCSWLIVQAM 329
>04_04_0092 -
22759791-22760676,22761446-22761813,22762202-22762207,
22763365-22763603,22764808-22765339
Length = 676
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 274 LIDDIQD-NSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLEL 408
LID D + IL +PV + IYG ++ ++ A E T+E+
Sbjct: 298 LIDGATDLDHILTSHVPVRNRIYGDCGAVDITQANLLYAFEATVEV 343
>04_04_0089 -
22724971-22725035,22725403-22725466,22725602-22725688,
22726775-22726789,22736269-22736685,22738235-22738473,
22739673-22740223,22740440-22740540
Length = 512
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 274 LIDDIQD-NSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLEL 408
LID D + IL +PV + IYG ++ ++ A E T+E+
Sbjct: 336 LIDGATDLDHILTSHVPVRNRIYGDCGAVDITQANLLYAFEATVEV 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,463
Number of Sequences: 37544
Number of extensions: 454131
Number of successful extensions: 1614
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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