Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021954
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_38362| Best HMM Match : BRCT (HMM E-Value=0) 31 1.0
SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3) 31 1.3
SB_40341| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 5.4
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 28 7.1
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_38370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 28 9.4
>SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 41.9 bits (94), Expect = 5e-04
Identities = 34/120 (28%), Positives = 54/120 (45%)
Frame = +1
Query: 136 LHIHSASTRETDKNEASFRIQLLAQDI*REAETSR*YCTKLHNASLLIDDIQDNSILRRG 315
L SA R AS R+ L + ET+ +H ASL+ DD+ D + RRG
Sbjct: 61 LRYFSAGKRVFPSRSASRRVIL------HDQETAAMISEMIHTASLIHDDVIDRADTRRG 114
Query: 316 IPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVYTEQLLELHRGQGMEIYWRDN 495
+ +YG + I A +Y + G+ A + E + EL RG+ M++ ++N
Sbjct: 115 KVAINLMYGDKNCILAGDYILSRVSLAIARFGNVEAVKLLAEIVDELVRGEFMQLGSKEN 174
>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
Length = 1572
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 453 TASRSGHGDLLAGQLPVSLEDEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLG 632
TA+ GH + AG+ P + +E Q++ K G L L I + + + +++ +++ LG
Sbjct: 870 TANVPGHSVVDAGEDPDATTEEENQVSEGKKGILHGLIISISKKLVQQQTELYGIASSLG 929
Query: 633 L-YFQIRDDYC 662
Y + DD C
Sbjct: 930 ADYRWVFDDSC 940
>SB_490| Best HMM Match : C1_1 (HMM E-Value=1.3)
Length = 256
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 125 ILMPYTYIQQVPGKQIRTKLASAFNYWLKISEEKLRLVGDIVQSY-TMPVY*ST 283
++ P T + + K SAFN LK+ EEK G ++SY T P++ ST
Sbjct: 151 VIHPSTIVLSLSPTLTECKQRSAFNRLLKVYEEKPVCEGRTLESYLTFPMHRST 204
>SB_40341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 68 STTMSQAITRSGDKNQDEKILMPYTYIQQVPGKQIRTKL 184
++T S+ IT +GD+NQ+EK P + PG ++ ++L
Sbjct: 9 TSTKSEEITENGDENQNEK--KPEAKLSMAPGVKLVSRL 45
>SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 330 LHLWCREHHQRCE-LCYDHSPREDFGAWPS 416
+ +WC HH LC DH R F AW S
Sbjct: 48 MFIWCPMHHFGAVILCPDHKCRMRFHAWTS 77
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 106 ITTSCDSLRHCCRSIDENNTK 44
IT+SCD+L HC R + N+TK
Sbjct: 225 ITSSCDNLEHCNRKVG-NHTK 244
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 526 CLYSSSRDTGSCPASKSPCPDLDAVPTAVRC 434
CL S SCP++ CP + +PT C
Sbjct: 208 CLDGSDEKHCSCPSNMFLCPSGECIPTTALC 238
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/67 (25%), Positives = 26/67 (38%)
Frame = +3
Query: 186 LPHSTTGSRYLKRS*D*SVILYKATQCQFIDRRYSRQQHLTARNTGSPLHLWCREHHQRC 365
L HSTTG+ + Y T+C + Q+ + P H + HH +C
Sbjct: 976 LSHSTTGNAQSVTVPSHNQSQYHHTKCDHTTSHSTITQNAITQPVTVPSHNQSQYHHTKC 1035
Query: 366 ELCYDHS 386
+ HS
Sbjct: 1036 DHTTSHS 1042
>SB_38370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 705 RSNSCSRCTPSSTGCSNRRGSGNTAPTRR 619
R SC RC ++ G R + TAP RR
Sbjct: 211 RVASCRRCAAAAGGPGAERAAAGTAPARR 239
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 616 CPPCWGCISRSATITATCR*GSTPR-TRVTARTSR 717
CP W SR+ T CR GS R T RT+R
Sbjct: 1178 CPRTWQTTSRTCTYACGCRDGSGARLTNHEPRTAR 1212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,907,929
Number of Sequences: 59808
Number of extensions: 523980
Number of successful extensions: 2110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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