Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021954
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    36   0.031
U53180-8|AAA96290.1|  452|Caenorhabditis elegans Sulfatase domai...    30   2.0  
Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   3.5  
U39646-3|AAA80369.1|  194|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U39646-2|AAA80368.2|  223|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC006608-5|ABC71834.1|  311|Caenorhabditis elegans Hypothetical ...    28   8.2  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 18/75 (24%), Positives = 39/75 (52%)
 Frame = +1

Query: 256 LHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVY 435
           +H ASL+ DD+ D +  RRG    ++++G   ++   ++ +  A +    +G P   +V 
Sbjct: 145 IHTASLVHDDVIDEANTRRGSASVNAVWGNKMSVLVGDFILARATQILCSIGKPNIISVM 204

Query: 436 TEQLLELHRGQGMEI 480
              + +L  G+ M++
Sbjct: 205 ASIIEDLVLGEFMQM 219


>U53180-8|AAA96290.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein 2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 507 LEDEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQIRDDYCN 665
           + D Y+Q  ++ T     +  + MQ  SE+KS    +  VLG Y +     CN
Sbjct: 359 IRDPYEQYPLQNTVKSQEIRFQAMQRLSEHKSSLVKVKNVLGSYNKTLIPCCN 411


>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 271 LLIDDIQDNSILRRGIPVAHSIYGVA-STINAANYAMIIALEKTLELGHPLATTVYTEQL 447
           L+ DDI DNS  RRG P      GV  S IN A + M   +E  L L  P    V  ++L
Sbjct: 96  LIADDIMDNSETRRGKPCWFRREGVGMSAINDA-FIMDSFVEDILRLALP--GHVNLDRL 152

Query: 448 LELHR 462
            E +R
Sbjct: 153 CEAYR 157


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 580  CISRIASMNSPPVFLMVICLYSSSRDTGSCPASKS 476
            CI+   S NSP V    +C++S+  D GSC +S S
Sbjct: 2281 CITT-PSENSPTVRKECLCVHSTRLDNGSCGSSDS 2314


>U39646-3|AAA80369.1|  194|Caenorhabditis elegans Hypothetical
           protein F47B7.5 protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 553 SPPVFLMV-ICLYSSSRDTGSCPASKSPCPDLDAV 452
           +P + +M  + + SS+    +CP S + CPDL A+
Sbjct: 50  APEITIMTTLAMESSTVTKEACPTSTTKCPDLSAI 84


>U39646-2|AAA80368.2|  223|Caenorhabditis elegans Hypothetical
           protein F47B7.4 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 553 SPPVFLMVICLYSSSRDTG-SCPASKSPCPDLDAVPTAVRCTQSL 422
           +P V +M      SS  T  +CP S + CPDL  +  A    Q +
Sbjct: 79  APEVTMMTTMATESSTVTEETCPTSTTKCPDLSTIALAPMMVQEV 123


>AC006608-5|ABC71834.1|  311|Caenorhabditis elegans Hypothetical
           protein C15F1.5b protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 351 HHQRCELCYDHSPREDFGAWPSIG 422
           HH  C+ CYD + R++    P++G
Sbjct: 12  HHDICQHCYDLASRKEKSCCPALG 35


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 351 HHQRCELCYDHSPREDFGAWPSIG 422
           HH  C+ CYD + R++    P++G
Sbjct: 82  HHDICQHCYDLASRKEKSCCPALG 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,023
Number of Sequences: 27780
Number of extensions: 386949
Number of successful extensions: 1248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)