Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021954
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   7.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 65  RSTTMSQAITRSGDKNQDEKILMPYTYIQQVP 160
           R T+  ++  R G     E  ++P  YI+Q+P
Sbjct: 308 RETSRERSRDRRGRGRSREHRIIPSHYIEQIP 339


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 702 SNSCSRCTPSSTGCSN 655
           +N C+RCT    G +N
Sbjct: 62  NNHCNRCTSRQIGIAN 77


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 98  SGDKNQDEKILMPYTYIQQVP 160
           + D N ++K+     YI+Q+P
Sbjct: 97  NNDNNYNKKLYYNINYIEQIP 117


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 360 RCELCYDHSPREDF 401
           +CE+ YD +P  DF
Sbjct: 177 KCEVLYDIAPLSDF 190


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 382 IALEKTLELGHPLATTVYTEQLLELHRGQGMEIYWRD 492
           +AL KTL+LG    +  Y      L +  G+ +   D
Sbjct: 453 LALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGND 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,335
Number of Sequences: 438
Number of extensions: 5117
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)