Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    29   0.57 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.1  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 407 EIEEVDEENFPKNDSQG--EEEPLSDKASAEEVASKGIKMREIFK 535
           EI EVD+EN  +N SQ   ++ P  D+   E +    ++++E ++
Sbjct: 25  EITEVDDENVNENKSQEMIQDIPARDREEIENITRTFVELQENYR 69


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 401 LFEIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREI 529
           +F     DE+    ND   +     +   AE +A KG++ +E+
Sbjct: 66  MFSDTSEDEKRTLPNDEAQKRRDFIENGDAERLAHKGLRNKEV 108


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 401  LFEIEEVDEENFPKNDSQGEEEPLSDKASAEEVASK 508
            L E+  +  E  PK D+   E+P+ D+   E++ SK
Sbjct: 1190 LLEVNPISGETIPKFDASSFEDPVCDE-FFEDIWSK 1224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,924
Number of Sequences: 5004
Number of extensions: 44489
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)