Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0709 + 27446105-27446111,27448091-27448632                       28   5.5  
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    27   9.7  
02_05_0517 + 29696436-29696741                                         27   9.7  

>04_04_0709 + 27446105-27446111,27448091-27448632
          Length = 182

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 455 GEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETPSPSTSGD 613
           GEE+P +D A+ EEV  +G  +  +         + AS S  Q    P+TS D
Sbjct: 112 GEEDPNTDTAADEEVEHEGAALAAVIGASTTSTYL-ASSSRQQRMWPPATSSD 163


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +2

Query: 476 DKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETPSPSTSGDRDVGATS 634
           D  S ++V + G+K    F+    H        ND  TP   T+ D ++   S
Sbjct: 152 DTPSPDDVVATGLKSSRSFRKDAPHVTEKRVMDNDSSTPEKDTTADSNLPVKS 204


>02_05_0517 + 29696436-29696741
          Length = 101

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 422 DEENFPKNDSQGEEEPLSDKASAEEVASKGIKMRE 526
           DEEN      +  EEP +  A  EE   KG+++ E
Sbjct: 58  DEENSAAPADRAVEEPAAAAAPVEEGEGKGVELEE 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,031
Number of Sequences: 37544
Number of extensions: 223523
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)