Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)                   31   1.1  
SB_51285| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)             29   4.3  
SB_45910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)            28   5.7  
SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11695| Best HMM Match : CHASE3 (HMM E-Value=1)                      28   7.5  
SB_25745| Best HMM Match : Ank (HMM E-Value=0)                         27   9.9  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      27   9.9  

>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
          Length = 592

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           E+ +E +  KN S+ +E+   DK +  +  S   K R+  K      +  ++HS  + TP
Sbjct: 410 EKKEERDLDKNSSERKEKHERDKEAKTKERSIS-KERDKSKGEKTKEKSSSNHSKHKSTP 468

Query: 593 SPSTSGDRDV 622
           S  TS D +V
Sbjct: 469 SLDTSKDGEV 478


>SB_51285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           E+ +E +  KN S+ +E+   DK +  +  S   K R+  K      +  ++HS  + TP
Sbjct: 18  EKKEERDLDKNSSERKEKHERDKEAKTKERSIS-KERDKSKGEKTKEKSSSNHSKHKSTP 76

Query: 593 SPSTSGDRDV 622
           S  TS D +V
Sbjct: 77  SLDTSKDGEV 86


>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
          Length = 946

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = +2

Query: 425 EENFPKNDSQGEEEPLSDKA----SAEEVASKGIKMREIFK*H---GKHWRIPASHSNDQ 583
           EEN  K++ Q E E LS K     S E   S+ I M    K     GKH +   + S  Q
Sbjct: 382 EENI-KHNKQQENEALSSKRQTRPSKERKCSRQISMETWMKREDEQGKHGQFADNRSRHQ 440

Query: 584 ETPSPST 604
           E+P  S+
Sbjct: 441 ESPQSSS 447


>SB_45910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 236 VQHQKLWSQKIRSGLNIPERINKEH 310
           +Q  K+W++ +R G  +PE I +EH
Sbjct: 349 LQGIKVWTRHVRDGKELPEIIREEH 373


>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
          Length = 469

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 465 NL*VIRLVPKKLHRKESK*GRSLNDMESIGEF 560
           +L VI + PK+LHR+     R+L++  + G++
Sbjct: 50  DLDVISITPKRLHRRSIHSSRTLHEFRAFGKY 81


>SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 392 FSVLFEIEEVDEENFPK-NDSQGEEEPLSDKASAEEVASKGIKMR-EIFK*HGKHWRIPA 565
           FS +  +   D+  FP  +    EEE  S   S EE A  G     EI+K   K +R+  
Sbjct: 112 FSPVLPVRVNDKLMFPLCHWCAQEEEQGSCTHSDEERAFTGTWAHPEIYKSLEKGYRVIR 171

Query: 566 SHSNDQETPSPSTSG 610
            +  D+E P PS  G
Sbjct: 172 VYEQDREEPGPSLRG 186


>SB_11695| Best HMM Match : CHASE3 (HMM E-Value=1)
          Length = 562

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 407 EIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIK 517
           E EE +EE     + +GEEE   DK   E   S+ IK
Sbjct: 27  EDEEEEEEEEETKEGEGEEEEEQDKQQEERQPSEIIK 63


>SB_25745| Best HMM Match : Ank (HMM E-Value=0)
          Length = 320

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 422 DEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRI 559
           D +   + DS GEEE LS+K   +  +SKG+        HG H R+
Sbjct: 14  DGDGESQTDSGGEEERLSEKVLYDLQSSKGVTALLYAARHG-HERV 58


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 425  EENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETPSPST 604
            +E   K   +  E+  S+K    + +SK  K  E  K   K  +    HS+D  T   S+
Sbjct: 887  KEKKRKEKKRRREKDSSEKTRVSK-SSKNFKAAESEKKKRKKKKKYRGHSSDDSTSDDSS 945

Query: 605  SGDRDVGATS 634
             G+R   +TS
Sbjct: 946  DGERRERSTS 955


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,692
Number of Sequences: 59808
Number of extensions: 272470
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)