SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110907-1|AAI10908.1|  515|Homo sapiens PPP1R12B protein protein.     32   2.0  
AL589762-3|CAH73375.1|  982|Homo sapiens protein phosphatase 1, ...    32   2.0  
AL356953-9|CAI15935.1|  982|Homo sapiens protein phosphatase 1, ...    32   2.0  
AF324892-1|AAK00336.1|  982|Homo sapiens myosin phosphatase targ...    32   2.0  
AF324888-1|AAK00337.1|  982|Homo sapiens myosin phosphatase targ...    32   2.0  
AB003062-1|BAA28376.1|  982|Homo sapiens myosin phosphatase targ...    32   2.0  
U81607-1|AAC51366.1| 1781|Homo sapiens gravin protein.                 30   6.1  
AB065835-1|BAC06054.1|  319|Homo sapiens seven transmembrane hel...    30   8.1  

>BC110907-1|AAI10908.1|  515|Homo sapiens PPP1R12B protein protein.
          Length = 515

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           +E++EEN   + S  EEE   D+AS  E   +  K  E F     H    +  S  ++ P
Sbjct: 348 QEMEEENKESSSSSSEEEEGEDEASESETEKEADKKPEAFV---NHSNSESKSSITEQIP 404

Query: 593 SPS 601
           +P+
Sbjct: 405 APA 407


>AL589762-3|CAH73375.1|  982|Homo sapiens protein phosphatase 1,
           regulatory (inhibitor) subunit 12B protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           +E++EEN   + S  EEE   D+AS  E   +  K  E F     H    +  S  ++ P
Sbjct: 348 QEMEEENKESSSSSSEEEEGEDEASESETEKEADKKPEAFV---NHSNSESKSSITEQIP 404

Query: 593 SPS 601
           +P+
Sbjct: 405 APA 407


>AL356953-9|CAI15935.1|  982|Homo sapiens protein phosphatase 1,
           regulatory (inhibitor) subunit 12B protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           +E++EEN   + S  EEE   D+AS  E   +  K  E F     H    +  S  ++ P
Sbjct: 348 QEMEEENKESSSSSSEEEEGEDEASESETEKEADKKPEAFV---NHSNSESKSSITEQIP 404

Query: 593 SPS 601
           +P+
Sbjct: 405 APA 407


>AF324892-1|AAK00336.1|  982|Homo sapiens myosin phosphatase target
           subunit 2 protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           +E++EEN   + S  EEE   D+AS  E   +  K  E F     H    +  S  ++ P
Sbjct: 348 QEMEEENKESSSSSSEEEEGEDEASESETEKEADKKPEAFV---NHSNSESKSSITEQIP 404

Query: 593 SPS 601
           +P+
Sbjct: 405 APA 407


>AF324888-1|AAK00337.1|  982|Homo sapiens myosin phosphatase target
           subunit 2 protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           +E++EEN   + S  EEE   D+AS  E   +  K  E F     H    +  S  ++ P
Sbjct: 348 QEMEEENKESSSSSSEEEEGEDEASESETEKEADKKPEAFV---NHSNSESKSSITEQIP 404

Query: 593 SPS 601
           +P+
Sbjct: 405 APA 407


>AB003062-1|BAA28376.1|  982|Homo sapiens myosin phosphatase
           targeting/regulatory subunit protein.
          Length = 982

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQETP 592
           +E++EEN   + S  EEE   D+AS  E   +  K  E F     H    +  S  ++ P
Sbjct: 348 QEMEEENKESSSSSSEEEEGEDEASESETEKEADKKPEAFV---NHSNSESKSSITEQIP 404

Query: 593 SPS 601
           +P+
Sbjct: 405 APA 407


>U81607-1|AAC51366.1| 1781|Homo sapiens gravin protein.
          Length = 1781

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 422 DEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWR----IPASHSNDQET 589
           +EE       Q + E +S++ S +E+A+K   + +I     +  R    IP+S SN +E 
Sbjct: 99  EEEVIVTEVGQRDSEDVSERDSDKEMATKSAVVHDITDDGQEENRNIEQIPSSESNLEEL 158

Query: 590 PSPSTSGDRDVG 625
             P+ S   D+G
Sbjct: 159 TQPTESQANDIG 170


>AB065835-1|BAC06054.1|  319|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
 Frame = +2

Query: 17  IYSQKKYT*SIRLKKYSSYRYILIIT------YVLQNVK-KNYLKRTLTNHGKLKI 163
           IY Q K + ++ + K +S  Y L+I       Y L+N + K+ LKRTLTN  K+ I
Sbjct: 264 IYLQPKSSHTLAIDKMASVFYTLLIPMLNPLIYSLRNKEVKDALKRTLTNRFKIPI 319


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,651,897
Number of Sequences: 237096
Number of extensions: 1344135
Number of successful extensions: 3243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3161
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -