Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-6|AAF60950.1|  491|Caenorhabditis elegans Hypothetical ...    30   1.6  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    29   3.7  
AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AC006833-6|AAF60950.1|  491|Caenorhabditis elegans Hypothetical
           protein ZK616.1 protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMRE 526
           EEV +   PKN+    EEP+ ++A   E   + +KM E
Sbjct: 395 EEVKKPEVPKNEEPKMEEPVKEEAPKVEEKKEEVKMVE 432


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 640  TNTSSTNISVPTSTW*RSLLIVTMTCWNSPMLSMSFK 530
            T  S T++  PT  W RS+L V     N P L ++ K
Sbjct: 1289 TACSKTSLFTPTCAWIRSILKVLAELHNEPDLKINLK 1325


>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 413 EEVDEENFPKNDSQGEEEPLSDKASAEEVASK 508
           +EV+EE   +NDS+ E    S+ +  ++VAS+
Sbjct: 106 DEVEEEGAIENDSESENSEDSEDSDLDDVASE 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,852
Number of Sequences: 27780
Number of extensions: 237450
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)