Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.36 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   1.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   1.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   1.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 89  ITYVLQNVKKNYLKRTLTNHGKLKITDS*STVLFHHL*SPYSE 217
           IT VL+N+  NY    L  HGK   T   + +L   +  P SE
Sbjct: 37  ITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSM-GPVSE 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 79  YFNNYIRFTKCKKELPKENT 138
           Y  NY +F   +K L K+NT
Sbjct: 446 YNKNYTKFCSTEKRLTKQNT 465


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 REHLLTMEN*KLLIVNQQYYFITFDHHILNIN-KKIKYNTK 248
           RE++L + N    +VN  + F   +  I+N N  ++  NT+
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 REHLLTMEN*KLLIVNQQYYFITFDHHILNIN-KKIKYNTK 248
           RE++L + N    +VN  + F   +  I+N N  ++  NT+
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 REHLLTMEN*KLLIVNQQYYFITFDHHILNIN-KKIKYNTK 248
           RE++L + N    +VN  + F   +  I+N N  ++  NT+
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 76  LYFNNYIRFTKCKKELPK 129
           LYFN+ +RF +   EL K
Sbjct: 25  LYFNSLVRFRRFTIELDK 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,054
Number of Sequences: 438
Number of extensions: 2994
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)