Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021953
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07950.1 68416.m00972 rhomboid protein-related contains 6 tra...    29   2.6  
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    29   3.5  
At5g60840.1 68418.m07632 expressed protein predicted protein, Dr...    27   8.1  

>At3g07950.1 68416.m00972 rhomboid protein-related contains 6
           transmembrane domains; similar to phosphatidyl inositol
           glycan class T (GI:14456615) [Homo sapiens]
          Length = 304

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 368 SLLFSMM*FLYP*WG*FAEYAPYLFVLEYLDLILFFVT 255
           SLLF M  FL P WG   E+  ++FV+ +L  +  FVT
Sbjct: 73  SLLF-MGKFLEPVWG-STEFLKFIFVVNFLTYLCVFVT 108


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 404 FEIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKGIKMREIFK*HGKHWRIPASHSNDQ 583
           FEI++ +E++  +++ + +EE   D    +E  SK  K   I    G   +I      D+
Sbjct: 305 FEIDDDEEDDIDEDEDEEDEEDEEDDDDEDEEESKTKKKPSIGNKKGGRSQIVGEGKQDE 364

Query: 584 ETP 592
             P
Sbjct: 365 RPP 367


>At5g60840.1 68418.m07632 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 207

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 407 EIEEVDEENFPKNDSQGEEEPLSDKASAE 493
           E+EEV+EE     + + E+E + D ASAE
Sbjct: 152 EVEEVEEEVDEVGEVEEEQEEVIDSASAE 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,431,702
Number of Sequences: 28952
Number of extensions: 205372
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)