Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021952
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   3.4  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   3.4  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   3.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   4.4  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   5.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.8  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 590 ELPIALRHLTNLVRSRSSTGSTPGDTAPTSG 682
           +LP   +H + L    SSTGSTP   +P  G
Sbjct: 58  KLPPPPKHASQLRAGGSSTGSTPRTASPAVG 88


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 578 TAHPELPIALRHLTNLVRSRSSTGSTPGDTAPTSG 682
           +A   +P+  RH+ + +R+R      P D   TSG
Sbjct: 137 SASQGIPLVRRHVADFIRARDGFDCEPSDIYLTSG 171


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -2

Query: 308 FHNMHHFTRLDSTFLKCCLS-FKIFPW*INXNDDDG 204
           F N H FTR+ S F     S F    W +   D DG
Sbjct: 84  FFNRHPFTRVKSCFSSSSPSKFSFTQWLVGFTDGDG 119


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 575 ATAHPELPIALRHLTNLVRS 634
           A  HP LPIALR L N  R+
Sbjct: 385 ARTHPNLPIALRTLFNKART 404


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 393 GCTPNAPGWTRAMQLLND-DSVMAEIIEQAPSLGEDCVALQYCTRLSYW 536
           G  PN  G    ++ ++D DS    II ++  LG++   +  CT  S W
Sbjct: 162 GSLPNWIGHCFVLKCVDDSDSATMGIISRSAGLGQNTKQICACTGKSLW 210


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 573 PRLIVCRLAPRAANNSTSCNIEELHNP 493
           PR I+  L PR  NN  S     L+NP
Sbjct: 62  PRAILIDLEPRVVNNILSDTYGSLYNP 88


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 8   LEFIASLIIYRV-ILKGNLNKKWITSHAYFWV*K*NLDQ 121
           L+ +AS+ +Y+  I KG +N K   SH Y +    N+D+
Sbjct: 309 LDLLASIGVYQPHIAKGRVNGKRTLSHMYEFTSTINVDE 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,194
Number of Sequences: 5004
Number of extensions: 57742
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)