Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021952
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325...    31   1.1  
01_03_0153 + 13255667-13255954,13258383-13258529,13258798-132589...    29   3.5  
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519...    28   6.0  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    28   6.0  

>05_01_0413 -
           3253345-3253461,3253595-3253666,3253763-3253876,
           3254050-3254163,3254420-3254520,3254616-3254694,
           3254789-3254863,3254955-3255017,3255281-3255361,
           3255449-3255574,3255898-3256022,3256722-3256839,
           3257420-3257554,3258029-3258175,3259016-3259321
          Length = 590

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 494 GLCSSSILHEVELLAALGANLQTMRRGATAHPELPIALRHLTNLVRSRSSTG 649
           GL ++ ++HE     ALG  LQ ++    AHP L   L  L    + +   G
Sbjct: 507 GLHAADLIHEASNAIALGTRLQDIKFAVHAHPTLSEVLDELFKAAKLQPREG 558


>01_03_0153 +
           13255667-13255954,13258383-13258529,13258798-13258932,
           13259344-13259461,13260925-13261049,13261407-13261532,
           13261617-13261697,13262188-13262250,13262328-13262402,
           13263439-13263517,13263627-13263727,13263952-13264065,
           13264225-13264338,13264406-13264477,13264561-13264608
          Length = 561

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 494 GLCSSSILHEVELLAALGANLQTMRRGATAHPELPIALRHL 616
           GL ++ ++HE     ALG  +Q ++    AHP L   L  L
Sbjct: 501 GLHAADLIHEASNAIALGTRVQDIKFAVHAHPTLSEVLDEL 541


>10_08_0799 -
           20650799-20650947,20651022-20651114,20651906-20651934,
           20652039-20652097,20652170-20652283,20652374-20652534,
           20652544-20652663,20652741-20653469,20654980-20655244
          Length = 572

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 151 LENTVDSLRTEAEKRSNVPSSSLXLIHHGKILKDKQ 258
           L+ TV + +       +VP++   LI+ G+ILKD+Q
Sbjct: 48  LDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQ 83


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +1

Query: 94   LGIKVKPGPIERHKLENFGLENTVDSLRTEAEKRSNVPSSSLXLIHHGKI----LKDKQH 261
            L  K KP    +H+     +EN V  L   +EK+++     L L+ H K     L+D++ 
Sbjct: 1032 LPFKSKPKDTPKHR--KTPVENRVPVLMQPSEKKTHAAIQQLRLLKHEKARKKKLQDEKK 1089

Query: 262  FKNVESSLVKWCML*KRR 315
             K  E+   K  +L K+R
Sbjct: 1090 KKAYEAEKAKSELLTKKR 1107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,137,795
Number of Sequences: 37544
Number of extensions: 391221
Number of successful extensions: 1052
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)