Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021952
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)                  30   1.5  
SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35)               28   6.2  
SB_42051| Best HMM Match : EGF_CA (HMM E-Value=6.9e-35)                28   6.2  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)
          Length = 384

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 669 AVSPGVDPVEERDLTRFVRCLNAMGNSGWAVAPRLIVCRLAPRAANNSTSCNIEE 505
           +V  GV P ++   TR V C N M N  + +       R +P+  + + +C ++E
Sbjct: 329 SVCAGV-PGQQGTSTRSVECRNRMANGSFPLLDEEECLRFSPKIPDRTKNCTVDE 382


>SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 500 CSSSILHEVELLAALGANLQTMRRGATAHPELPIALRHL 616
           C S +L  V+LL  LGANL+   R   +   L     HL
Sbjct: 52  CKSGVLETVQLLVELGANLKATNRSLQSGIVLAALYGHL 90


>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 103 KVKPGPIERHKLENFGLENTVDSLRTEAEKRSN 201
           K++ GP+   K+E  GLE  VD L  + E + N
Sbjct: 166 KLEEGPVSAEKIEEVGLEKEVD-LEEDVEMKEN 197


>SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 479 PITRRGLCSSSILHEVELLAALGANLQTMRRGATAHPEL 595
           P+    +C+SS++HE +     G  L  ++R +T + E+
Sbjct: 125 PLNGSSICASSVVHESKGYGKTGVRLLKIKRRSTLYHEI 163


>SB_42051| Best HMM Match : EGF_CA (HMM E-Value=6.9e-35)
          Length = 398

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 514 IARG*VIGSSGCQSTNNEAGCHSPSRIAHSIET 612
           ++R  VI +SG  ST+N  G  +  +I+H++ET
Sbjct: 223 VSRALVIVTSGNASTDNITGLAADLKISHNVET 255


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 514 IARG*VIGSSGCQSTNNEAGCHSPSRIAHSIET 612
           ++R  VI +SG  ST+N  G  +  +I+H++ET
Sbjct: 223 VSRALVIVTSGNASTDNITGLAADLKISHNVET 255


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 357  ELQQLNASLRTL--GCTPNAPGWTRAMQLLNDDSVMAEIIEQAPSLGEDC 500
            +L   N+S+R+   G +     W R ++ L D+S ++     +PS+ ++C
Sbjct: 2177 DLLSRNSSIRSFLFGSSDKYTTWVRLVKSLKDNSTLSTFHIHSPSIDDNC 2226


>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1457

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 124 ERHKLE-NFGLENTVDSLRTEAEKRSNVPSSSLXLIHHGKILKDK 255
           E+H  E +  L++  DSL T  EK  ++      + HH K L+D+
Sbjct: 663 EKHIQELSESLDSLQDSLATSLEKNQSLQLEQKKIAHHHKSLQDE 707


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,630,640
Number of Sequences: 59808
Number of extensions: 427487
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)