Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021952
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 34 0.077
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 34 0.10
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 34 0.10
At1g03380.1 68414.m00317 expressed protein 31 0.54
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 30 1.3
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 30 1.7
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast... 29 2.9
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 29 2.9
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 28 5.0
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 28 5.0
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 28 5.0
At5g46770.1 68418.m05761 expressed protein 27 8.8
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 27 8.8
At5g18740.1 68418.m02224 expressed protein predicted proteins - ... 27 8.8
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 27 8.8
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 27 8.8
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 34.3 bits (75), Expect = 0.077
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 151 LEN-TVDSLRTEAEKRSNVPSSSLXLIHHGKILKD 252
LEN T++ LR E KRS + S+ LI GKILKD
Sbjct: 18 LENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKD 52
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 151 LENTVDSLRTEAEKRSNVPSSSLXLIHHGKILKDKQ 258
L++TV+S + + S+VP++ LI+ G+ILKD Q
Sbjct: 36 LDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQ 71
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 151 LENTVDSLRTEAEKRSNVPSSSLXLIHHGKILKDKQ 258
L++TV+S + + S+VP++ LI+ G+ILKD Q
Sbjct: 36 LDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQ 71
>At1g03380.1 68414.m00317 expressed protein
Length = 926
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +1
Query: 58 SQQEMDNQPCIFLGIKVKPGPIERHKLENFGLENTVDSLRTEAEKRSNVPSSSLXLIHHG 237
+Q NQ + V + R K +FG NTV + T A + VPS ++ + H
Sbjct: 466 TQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNATTAATGKVFVPSGAVAAVFHK 525
Query: 238 KILKDKQ 258
+ D Q
Sbjct: 526 SVTHDLQ 532
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 494 GLCSSSILHEVELLAALGANLQTMRRGATAHPELPIALRHLTNLVRSRS 640
GL ++ ++HE ALG +Q ++ AHP L L L + S
Sbjct: 509 GLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKAAKVES 557
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 485 TRRGLCSSSILHEVELLAALGANLQTMRRGATAHPELPIALRHLTNLVRSRSSTGSTPGD 664
TR LCS ILH A +G + + TA L + + H + S S+ GD
Sbjct: 1038 TRENLCSEIILHTEHSSAHVGMEIPDIN---TASENLVVDMTHDGEPLESSDILSSSNGD 1094
Query: 665 TAPTSG 682
A ++G
Sbjct: 1095 EASSNG 1100
>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159284]
Length = 567
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 494 GLCSSSILHEVELLAALGANLQTMRRGATAHPEL 595
GL ++ ++HE ALG +Q ++ AHP L
Sbjct: 506 GLHAADLIHEASNAIALGTRIQDIKLAVHAHPTL 539
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 181 EAEKRSNVPSSSLXLIHHGKILKDK 255
+++ + N P LIH+GK+LKD+
Sbjct: 32 DSQSKDNYPCGQQLLIHNGKVLKDE 56
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 181 EAEKRSNVPSSSLXLIHHGKILKDK 255
+++ + N P LIH+GK+LKD+
Sbjct: 32 DSQGKDNYPCGQQLLIHNGKVLKDE 56
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 181 EAEKRSNVPSSSLXLIHHGKILKDK 255
+++ + N P LIH+GK+LKD+
Sbjct: 32 DSQGKDNYPCGQQLLIHNGKVLKDE 56
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 181 EAEKRSNVPSSSLXLIHHGKILKDK 255
+++ + N P LIH+GK+LKD+
Sbjct: 32 DSQGKDNYPCGQQLLIHNGKVLKDE 56
>At5g46770.1 68418.m05761 expressed protein
Length = 133
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 687 ANPDVGAVSPGVDPVEERDLTRFVRCLNAMGNSGWA--VAPRLIVCRLAPRAANNSTSCN 514
+N DV PG VE ++ C+N +G W+ ++PR+ P ++
Sbjct: 16 SNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYEKIGRPGSSLAHKMKK 75
Query: 513 IEELHNPLLVMGPV 472
++++H+ + + GPV
Sbjct: 76 VKKIHH-VRLSGPV 88
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 181 EAEKRSNVPSSSLXLIHHGKILKDK 255
E K + P++ LIH GK+LKD+
Sbjct: 31 ETVKGAEYPAAKQMLIHQGKVLKDE 55
>At5g18740.1 68418.m02224 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 609
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 97 GIKVKPGPIERHKLENFGLENTVDSLRTEAEKRSNVPSSSLXLIHHGKILK 249
G+K K P + ++L+ L T++ + + SN+ +++G+I K
Sbjct: 382 GVKGKDMPKDAYELDQAALPETIEEIIVPSNSESNINGYDDLPLYYGRIQK 432
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 482 ITRRGLCSSSILHEVELLAALGANLQTMRRGATAHPELPIALRHLTNLV 628
+T L + S E E + NL+ + T+ ELP+++R+LT LV
Sbjct: 1236 LTTLKLLNLSGCSEFEDIQDFAPNLEEIYLAGTSIRELPLSIRNLTELV 1284
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 454 TESSFKSCIALVQPGAFGVHPRVL 383
T+ FK+ +A+V P G+HP V+
Sbjct: 692 TKPQFKNVVAIVDPPRSGLHPAVI 715
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,586
Number of Sequences: 28952
Number of extensions: 308483
Number of successful extensions: 742
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -