Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021951
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 564 QEVXEWIRSCQYCAARDSFSTR 499
           QE+ EW+ S  Y  + D F  R
Sbjct: 534 QEIPEWLGSKSYGGSADQFGGR 555


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 326 KHCPRNSPTNT 358
           K CP+N PT T
Sbjct: 732 KECPKNRPTFT 742


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 97  SANHSKSFEYFIVSLANLIKCLVTSC 174
           S    K+  YFI +    +KCL   C
Sbjct: 44  SKKEFKTRTYFIYAFVAPVKCLAFFC 69


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 97  SANHSKSFEYFIVSLANLIKCLVTSC 174
           S    K+  YFI +    +KCL   C
Sbjct: 277 SKKEFKTRTYFIYAFVAPVKCLAFFC 302


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 97  SANHSKSFEYFIVSLANLIKCLVTSC 174
           S    K+  YFI +    +KCL   C
Sbjct: 277 SKKEFKTRTYFIYAFVAPVKCLAFFC 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,599
Number of Sequences: 336
Number of extensions: 2663
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)