BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021951 (575 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.6 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.0 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 6.0 SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 25 7.9 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 26.6 bits (56), Expect = 2.6 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 386 QVMFAAFGFKYLSANSLDNA*YSFCCSVS*LVKLLHWD 273 +++F +FGFK S S + CCS S L LH+D Sbjct: 2021 EILFLSFGFKESSLLSQVLDSFFLCCSGS-LSNCLHYD 2057 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 25.4 bits (53), Expect = 6.0 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -2 Query: 460 SSSTQAPIRPVAVSFFITSKGNRPSKSCSLRSASSI 353 SSS+++ PV+ +F+ S +R S S S SS+ Sbjct: 409 SSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSL 444 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 25.4 bits (53), Expect = 6.0 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = -1 Query: 248 EQIIKSYRL*CDTCCHFVFKNYCSQHEVTRHLIRLASDTIKYSKDFEWFALK 93 + ++K+Y + H VF++ E+TR L S +I +S++ E +K Sbjct: 581 DPVLKTYL--AGSSIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVK 630 >SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22 |Schizosaccharomyces pombe|chr 2|||Manual Length = 391 Score = 25.0 bits (52), Expect = 7.9 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 452 DAGAHQACGCQLFYHIKREPSFQVMFA 372 D G H C +F H+K P +V+ A Sbjct: 262 DEGLHTDFACLMFSHLKHRPGRKVVEA 288 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,190,939 Number of Sequences: 5004 Number of extensions: 41727 Number of successful extensions: 115 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 246098644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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