Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021951
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   6.0  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    25   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 386  QVMFAAFGFKYLSANSLDNA*YSFCCSVS*LVKLLHWD 273
            +++F +FGFK  S  S     +  CCS S L   LH+D
Sbjct: 2021 EILFLSFGFKESSLLSQVLDSFFLCCSGS-LSNCLHYD 2057


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 460 SSSTQAPIRPVAVSFFITSKGNRPSKSCSLRSASSI 353
           SSS+++   PV+ +F+  S  +R S   S  S SS+
Sbjct: 409 SSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSL 444


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 248 EQIIKSYRL*CDTCCHFVFKNYCSQHEVTRHLIRLASDTIKYSKDFEWFALK 93
           + ++K+Y     +  H VF++     E+TR    L S +I +S++ E   +K
Sbjct: 581 DPVLKTYL--AGSSIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVK 630


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 452 DAGAHQACGCQLFYHIKREPSFQVMFA 372
           D G H    C +F H+K  P  +V+ A
Sbjct: 262 DEGLHTDFACLMFSHLKHRPGRKVVEA 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,939
Number of Sequences: 5004
Number of extensions: 41727
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)