Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021951
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    30   1.5  
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019...    30   1.5  
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    29   3.5  
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716...    28   4.6  
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871...    28   6.1  
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681     27   8.1  

>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 547 DTIMPVLRSPGQLFHATASVK*SR--PLPPYSSSTQAPIRPVAV 422
           + ++P+L  P    H TA VK S   P PP  SST  P+ PVAV
Sbjct: 645 EQLIPMLLYPPAKPHTTAIVKGSTCYPPPPPPSST-PPVEPVAV 687


>02_03_0314 -
           17600970-17600974,17601230-17601357,17601832-17601924,
           17602145-17602257,17602520-17602627,17602724-17602828,
           17603185-17603355,17603474-17603652,17603741-17603969,
           17604841-17604955,17605137-17605312,17606060-17606143,
           17606463-17606630,17607011-17607097,17607201-17607323
          Length = 627

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 250 RRLREGVRSQCRSFTSQLTEQQKEYQALSKEFAD 351
           RRL++ + S   + T+  T QQ++Y ALS+E  D
Sbjct: 295 RRLQQEINSSTSARTTYFTLQQQQYAALSEENED 328


>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 460 SSSTQAPIRPVAVSFFITSKGNRPSKSCSLRS--ASSICRRIP 338
           S+++Q   R   +S  +   G+RPS SCS R+   SS+ + +P
Sbjct: 209 STASQGTSRSSGLSSTVVPSGSRPSSSCSSRAQQLSSVQKVVP 251


>02_05_0656 +
           30671152-30671227,30671330-30671464,30671591-30671676,
           30672184-30672278,30672431-30672556,30672659-30672809
          Length = 222

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 303 DGTTKRISSIVQGIRRQILEAERSEHDLEGRFPFDVIKKLTA 428
           +GT  R+S  ++ I + I  ++ S +D EGRF  +  +++ A
Sbjct: 101 NGTAPRLSIYIENIYKGIHGSDSSAYDSEGRFVAEKFEEIFA 142


>10_08_0854 +
           21086253-21086258,21086320-21086480,21087065-21087175,
           21087275-21087329,21087796-21087963,21088232-21090082,
           21090355-21090690
          Length = 895

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 323 YSFCCSVS*LVKLLHWDLTPSRKRREQIIK 234
           Y F C    +    HW +TPSR+++ Q+ K
Sbjct: 36  YFFSCLELKIFSTPHWSITPSRQQQAQLRK 65


>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
          Length = 118

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 528 CAARDSFSTRRPVSSSLDPCHRILXXXXRPSGLWLSAFLSHQKGTVLPS 382
           CA  D F     ++ +  PC+R        SGL +S F   Q GT  P+
Sbjct: 34  CACHDGFQNL--LNDTSYPCYRQCSLGSDCSGLGISMFNGSQPGTAPPA 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,368
Number of Sequences: 37544
Number of extensions: 263496
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)