Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021951
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   4e-04
SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)                     29   3.6  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   3.6  
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_14343| Best HMM Match : PAN (HMM E-Value=3.4e-05)                   28   6.3  
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 381 DLEGRFPFDVIKKLTATGLMGACVDEEYGGKGLDYLTLAVAWKSCP-GLRSTGMIVSIH 554
           D E R+P + +K L   GL+G  V E  GG GLD    A+A +    G  S G I+S++
Sbjct: 68  DKEHRYPQEKVKMLGELGLLGVEVPESLGGTGLDAFAYAIAMEEISRGCASLGCIMSVN 126


>SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)
          Length = 233

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
 Frame = -3

Query: 573 VRVQEVXEWIRS-----CQYCAARDSFSTRRPVSSSLDPCHRILXXXXRPSGLWLSAFLS 409
           +RV  + +W  S        C   DS   R+P +  L    R+L      SG  + AFL+
Sbjct: 144 IRVPSITKWPGSGFTFHAWVCLEPDSARQRKPNAPPLSVDRRLLYSFFSASGTGVEAFLT 203

Query: 408 HQKGTVLPS 382
           H    V+ S
Sbjct: 204 HDGTLVVAS 212


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 259  REGVRSQCRSFTSQLTEQQKEYQALSKEFAD 351
            R+ +R Q  S   +L + ++EY  L KEF D
Sbjct: 1203 RDSLREQLDSVKDELRKSKEEYAVLQKEFID 1233


>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 564 QEVXEWIRSCQYCAARDSFSTRRP 493
           ++V EW R C  CAAR     RRP
Sbjct: 834 RDVEEWCRRCDVCAARKGLE-RRP 856


>SB_14343| Best HMM Match : PAN (HMM E-Value=3.4e-05)
          Length = 158

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 471 CHRILXXXXRPSGLWLSAFLSHQKGTVLPSHVRCVRLQVFVGEFLGQCLI 322
           C  +      PSG + S   +   G VL +H+   + +V + E  G CL+
Sbjct: 52  CKYVSPMETPPSGAYYSQLYTSTHGKVLVNHIFSHKKRVTILECAGLCLV 101


>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 372 SEHDLEGRFPFDVIKKLTATGLMGACVDEEYGG 470
           SE D   +    +IK L   GLMG  +  EYGG
Sbjct: 66  SEMDQNSQMDPGIIKGLFEQGLMGIEIGSEYGG 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,293,832
Number of Sequences: 59808
Number of extensions: 314489
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)